| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5115 |
|---|
| Symbol | melA |
|---|
| ID | 7380920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 102879 |
|---|
| End bp | 104240 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643648773 |
|---|
| Product | alpha-galactosidase |
|---|
| Protein accession | YP_002547010 |
|---|
| Protein GI | 222106219 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1486] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAC AGCCCAAAAT CACCTTCATT GGTGCCGGTT CCACCGTGTT CATGAAGAAT
ATCATCGGCG ACGTTCTGCA ACGTCCGGCA CTATCAGGTG CGCGTATCGC ACTGATGGAT
ATCAATCCGC AGCGTCTGGA AGAAAGCGAA GTTGTTGCCA GGAAGCTGAT TTCCACCTTT
GGCGCATCCG CAACGGTTGA GACCTTTGCC GATCAGCGCA AAGCGCTGGA GGGGGCCAAC
TTCGTGGTCG TCGCCTTCCA AATCGGCGGT TATGAGCCTT GCACCGTCAC CGATTTCGAG
GTGCCAAAGA AATACGGCCT GCGCCAGACC ATTGCCGACA CATTGGGCGT TGGCGGCATC
ATGCGCGGTT TGCGCACCGT GCCGCATCTG TGGAGCATTT GCGAGGATAT GATGCAGGTC
TGCCCGCAAG CGATCATGCT GCAATATGTC AACCCGATGG CCATCAATAC CTGGGCGATT
GCCGAGAAAT ATCCGGCCAT CAAACAGGTT GGCCTGTGCC ACTCCGTTCA GGGTACGGCC
ATGGAACTGG CAGAGGATCT GTCCATTCCC TATGAGGACA TCCGCTACCG CTCTGCAGGC
ATCAATCACA TGGCGTTCTA CCTCAATTTC GAGCACCGCC AGCCGGATGG CTCCTATCGT
GACCTCTATC CCGATCTGCT GCGCGGCTAT CGTGAGGGCC GCGCGCCGAA GCCAACCTGG
AACCCGCGCT GCCCCAACAA GGTGCGCTAT GAAATGCTGA CGCGCCTTGG CTATTTCGTC
ACCGAAAGCT CGGAGCATTT TGCCGAATAC ACGCCGTATT TCATCAAGGA CGGCCGCGAA
GACCTGATTG AGAAATTCGG TATTCCGCTG GATGAATATC CCAAGCGCTG CATCGAACAG
GTTGAGCGAT GGAAGGATCA GGCCGCTGCC TACCGCTCCG CAGACAAGAT CGAAGTCAAG
CCATCGAAGG AATATGCCTC GTCGATCATC AATTCGGTCT GGACGGGTGA GCCCTCGGTG
ATTTACGGCA ACCTGCGCAA CAATGGCTGC ATCACCTCGC TACCGGACAA TTGCGCCGTG
GAAGTGCCCT GCCTTGTCGA TGACAACGGC ATTCAGCCCA CCACCATCGG CGCCCTGCCA
CCGCAGCTCA CAGCCCTGAT GCGCACCAAC ATCAACGTGC AGGAACTGAC GGTGGCTGCC
TTGATCAACG AAAACCCCGA ACACCTCTAT CACGCCGCGA TGATGGACCC GCATACAGCA
GCCGAACTCG ACCTCGACCA GATCTGGTCA TTGACGACGG ACCTGTTGAA GGCTCACGAT
CAGTGGATTC CGCAATGGGC CCGCATCGGA GGGGTGGCGT AA
|
|---|
| Protein sequence | MTKQPKITFI GAGSTVFMKN IIGDVLQRPA LSGARIALMD INPQRLEESE VVARKLISTF
GASATVETFA DQRKALEGAN FVVVAFQIGG YEPCTVTDFE VPKKYGLRQT IADTLGVGGI
MRGLRTVPHL WSICEDMMQV CPQAIMLQYV NPMAINTWAI AEKYPAIKQV GLCHSVQGTA
MELAEDLSIP YEDIRYRSAG INHMAFYLNF EHRQPDGSYR DLYPDLLRGY REGRAPKPTW
NPRCPNKVRY EMLTRLGYFV TESSEHFAEY TPYFIKDGRE DLIEKFGIPL DEYPKRCIEQ
VERWKDQAAA YRSADKIEVK PSKEYASSII NSVWTGEPSV IYGNLRNNGC ITSLPDNCAV
EVPCLVDDNG IQPTTIGALP PQLTALMRTN INVQELTVAA LINENPEHLY HAAMMDPHTA
AELDLDQIWS LTTDLLKAHD QWIPQWARIG GVA
|
|---|
| |