Gene Avi_5114 details

Gene Information

• Locus tag: Avi_5114
• Symbol: greB
• ID: 7380919
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 102248
• End bp: 102733
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643648772
• Product: transcription elongation factor regulatory protein
• Protein accession: YP_002547009
• Protein GI: 222106218
• COG category: [K] Transcription
• COG ID: [COG0782] Transcription elongation factor

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGTTG CATTTACCAA GGAAGACAGT GCGGAAACGG CAGCTGAAAC GCTACTGCCC 
GAGCGTCCGA TTTCGCCACA TCCGAATCTC GTGACGGAAT CGGGATTAAA AGCGCTGGAG 
CGGCAACGTG TGCAAGCACG TGACGCCTAT GATGCCGCGC GCGCAATTGA AGACGTCAAT 
GAACGGCGTC GGCAGATGGC CGGCCCTTTT CGGGATTTGA ACTACCTTGA AGAGAGGCTT 
CACACGGCTC AGGTCATGCC CGATCCGATC ACCGCTGATA GCGTCTCTTT TGGGACGACC 
GTGACGTTCA CCCGTGATGA TGGACGCGTC CAAACCTATC GTATCGTCGG CGAAGACGAA 
GCAGATCCGA AGGCAGGATC GATCTCCTAC GTCTCCCCGG TGGCAAGGGC GCTTATCGGC 
AAGGCTGTCG GTGATGTCGT CAGTCTTGGT GATCAAGAGC TTGAGATCAC GGCTATCTCG 
CCGTGA 

 

Protein sequence

MSVAFTKEDS AETAAETLLP ERPISPHPNL VTESGLKALE RQRVQARDAY DAARAIEDVN 
ERRRQMAGPF RDLNYLEERL HTAQVMPDPI TADSVSFGTT VTFTRDDGRV QTYRIVGEDE 
ADPKAGSISY VSPVARALIG KAVGDVVSLG DQELEITAIS P