| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5088 |
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| Symbol | |
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| ID | 7380901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 81376 |
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| End bp | 82317 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648754 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002546991 |
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| Protein GI | 222106200 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGCT ATATCGTCAA GCGCCTGCTT GGCATGATTG TGGTGATGTT TCTGGTGGTG
ACCATTGTGT TCATCATCGT GCGCGTCACC CCCGGTGATC CCGCAGCCGT CATGCTGGGG
CCGGATGCGT CAGCGCAAGA TGTTGCCGAT CTGCGCTCCA AGCTGGGGCT GGATCAATCG
CTGATCTCGC AATACGTATT TTATATCGGG GCCTTGTTGA CGGGTGATCT GGGCCGTTCG
ATCTTTCTCG ATATGCCGGT GGGTGCTGCC CTGTTGCAAC GGGCCGAGCC AACCTTTTTC
CTCACGCTAT TTGCACTGCT GATTGCCTGC CTGCTGGCGC TTCCCATTGG TATTTATGCC
GCCTATCGGC GCGGCTCATG GCTCGATCAA GCGGTGACGG CCATTGCCAT GCTGGCGGCC
AGCATTCCCA GCTTCTGGCT TGGCTTGATC CTCATGCAGT TCTTTGCCGT CAAGCTGCAA
CTGTTTCCCG TCTCCGGTTA TGGCGGACCG GGAACAAGTT TTCTGGAACG GATGTACCAT
CTGGCTTTGC CCGCCATCGC GCTGGGTCTG GTCTCATCAT CCCTGATCCT GCGCTTTACC
CGCGCCTCTA TGCTGGATGT GCTGGGCGAT GATTTTGTGC GCACCGCCCG CGCCAAAGGC
CTGCAAGAGC GGCATGTGGT GCTGCGCCAT GCGCTGAAGA ATGCTTTGAT CCCGATCCTC
ACCGTGGTGG GGCTGACGGC AGCGGTGCTG ATTTCGGGAG CCGTTGTCAC CGAGACAGTG
TTTGGCCTGC CCGGCATTGG CAGCCTCGTG GTCTCTGCTG TTTTGCGCCG GGATTATCCG
GTTATTCAAG GGGCCTTGCT GGTGATTGCC GGTCTCTATG TGCTGGTGAA TTTCGCCATC
GATATGCTCT ATCTGCTGAT TGATCCGAGG GTGCGTTACT GA
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| Protein sequence | MISYIVKRLL GMIVVMFLVV TIVFIIVRVT PGDPAAVMLG PDASAQDVAD LRSKLGLDQS
LISQYVFYIG ALLTGDLGRS IFLDMPVGAA LLQRAEPTFF LTLFALLIAC LLALPIGIYA
AYRRGSWLDQ AVTAIAMLAA SIPSFWLGLI LMQFFAVKLQ LFPVSGYGGP GTSFLERMYH
LALPAIALGL VSSSLILRFT RASMLDVLGD DFVRTARAKG LQERHVVLRH ALKNALIPIL
TVVGLTAAVL ISGAVVTETV FGLPGIGSLV VSAVLRRDYP VIQGALLVIA GLYVLVNFAI
DMLYLLIDPR VRY
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