Gene Avi_5073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5073 
Symbol 
ID7381227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp65889 
End bp66572 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content54% 
IMG OID643648741 
Producttranscriptional regulator TetR family 
Protein accessionYP_002546978 
Protein GI222106187 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.479761 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTCATC CACGAAACAA GAATTCTAGA TCAAAACGAG AGTTGATCAT GGCCGCTGCC 
GTCGATCTAC TTTTGGCCAA TGGATATGAG AGAACCTCTA TGGATGCGGT GGCCGCCAAG 
GCCGGCGTTT CAAAGACGAC TGTCTATGCG CATTTTTCCG ACAAGCTTGA ATTATTTCAT 
GCCGTCATGA CACATGCCGC TTCCGATTTC GCGCTGGACC TCGGCAGCGT TGTGGAAAGT 
CGATCCGTCG CAGATCCCCT GGAGCAACTG ACAAGCGTGC TGCTTGAGGT CGTCAAAGCC 
GCATCCGCCC CCGAGCTGAC CGCCTATTTC CGGGTTCTCA TTGCAGAAAT CGACAGACGC 
AGCGAACTGC AAGCCATGTC TGATCAGGTC CAGTCAGATA TGCCTGACGT GATCCGCATC 
ATTGCGTCGC TCATCGTGAA AGTTGCCGCC ACCCGCGGCT ATGTCGTTGA AGATCCTGAA 
CGCTATGCCA CATTGCTGGT GCGCATGACA GCACCGGGAA CTCAGTTCGA CATCCTCGTC 
GCAAACTTCC GGCCCTCGGA CGAAATCCTC GCAGCCCATA TCGGCCTCAT CGTCAGCATC 
TTCTTCGATG GCATCGGACC GAAAGACAGC GACACCAAGG TCGTAAACCT ACCCCCGCTC 
TATCTCTATC CAATCAGACG ATAA
 
Protein sequence
MPHPRNKNSR SKRELIMAAA VDLLLANGYE RTSMDAVAAK AGVSKTTVYA HFSDKLELFH 
AVMTHAASDF ALDLGSVVES RSVADPLEQL TSVLLEVVKA ASAPELTAYF RVLIAEIDRR 
SELQAMSDQV QSDMPDVIRI IASLIVKVAA TRGYVVEDPE RYATLLVRMT APGTQFDILV 
ANFRPSDEIL AAHIGLIVSI FFDGIGPKDS DTKVVNLPPL YLYPIRR