| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5055 |
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| Symbol | |
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| ID | 7381212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 47628 |
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| End bp | 48527 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643648726 |
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| Product | transcriptional regulator AraC family |
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| Protein accession | YP_002546963 |
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| Protein GI | 222106172 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.702992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGAGG AATACGCGCT GATGCGGCGA GCCTGGGGCC AGAGCCTGGA GCCGACGCTT
TCACAACGCA TCATCGGTAT TGGCAACCAT CCCTATCGTT GGTTTACCCA TCTGGTCTTC
ATTCGGCTGG GTACGGTCAG GCTTGGTGCC GGTGACACTG CGGGCGTGCT GCAAGGCCCG
TGTCTCCTGC TGCTACCGTC TTCGGAACTG GTAAGGCTGC GCCTTTCTGC TGGCTCATGC
GGCCATGTCA TTGGCGCGGC CATGGATATT ATCGGCGATG CCATCGGCGA TTATCCGGAA
TCCAAGCCAA TTAGACTGTT CATCACAACG ACAACGATCA TGACGGGACT GTTGCCGCAG
CAGGCAAGCG CACTGGAACC GCACATGCGT GGCCTCATCG ACGAATTGAA CCGGGATGGA
CAACCTTCGC ATATGGTGGT GTCAGCCTAT TTACGGCTGC TGATCAATTG GGTCTGGCGC
CACAATATGC CTCCCGGGCC AGCCGCATCG CTGTCTTCCG GGGGCGCTGC ACCAATCCTG
CATCAATTCC GGCAATTGGT GGAGGCGGAC TATCGTCATC ATCGGCCCGT TGCCGATTAT
GCCGCTCGCC TGGGGATCTC GACCGACCGT CTGCATGCGC TATGCCGAAA ACATCTCGGC
CGCGCGCCGA TTGAGCTTGT GCATGAGCGG CTGGCGCAGG AGGGCCGTAT CCGGCTGGAG
CGTTCCGATA GTAGCGCACG CGACATTTCA GAAGCGCTGG GCTTTCGTGA TCCGGCGCAT
TTCAGCCATT TTTTCAAACG GAAAACCGGT CTTTCCCCGG CAGCCTATCG GCGCATGGTC
CGGCAATCAT CAGTAAATCC CGGTCTTGGT ACCAATATGG ACTATCACGA CTGGCCCTGA
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| Protein sequence | MVEEYALMRR AWGQSLEPTL SQRIIGIGNH PYRWFTHLVF IRLGTVRLGA GDTAGVLQGP
CLLLLPSSEL VRLRLSAGSC GHVIGAAMDI IGDAIGDYPE SKPIRLFITT TTIMTGLLPQ
QASALEPHMR GLIDELNRDG QPSHMVVSAY LRLLINWVWR HNMPPGPAAS LSSGGAAPIL
HQFRQLVEAD YRHHRPVADY AARLGISTDR LHALCRKHLG RAPIELVHER LAQEGRIRLE
RSDSSARDIS EALGFRDPAH FSHFFKRKTG LSPAAYRRMV RQSSVNPGLG TNMDYHDWP
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