| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5050 |
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| Symbol | |
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| ID | 7381207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 41536 |
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| End bp | 42576 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643648721 |
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| Product | ABC transporter membrane spanning protein (ribose) |
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| Protein accession | YP_002546958 |
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| Protein GI | 222106167 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTC GCTCCATGTC GTCTTTCTTG AAGCCGCAAT TTGCAGCGCT CATCGCCGTC
CTGCTGTTGA ACTGGATGGT GTTTCCCGGT TTCTTCGATA TCGCCTGGCG CGATGGCCGG
TTGTTCGGCA GCCTGATCGA TGTGCTCAAT CGTGGCGCAC CGGTTGCCAT TCTCGCCATC
GGCATGACAG CCATCATTGC AACACGCGGT GTCGATCTTT CCGTCGGCGC GGTCATGGCG
GTGGCGGGCG CCGTTGCCGC CACCTGCGCC GTCGCAGGCC AGCCCTTGGT GGTGACCTTG
GCAGCAGCGC TTGCCGTGGC GCTCGCCTGC GGCATCTGGA ACGGCCTGCT GGTTGCCTAT
CTCGGTATTC AGCCTTTTGT GGCGACGCTG GTGCTGATGG TGGCGGGCAG GGGGCTGGCG
CAATTGGTCA CATCCGGGTC GATTGTCACC TTCAGCGATC CGGCTCTTGT TTTCGTGGGA
ACAGGATCAC TGCTTGGTTT CCCGATGCCG GTGGTGATTG CCCTGGTGCT GATGCTGTCC
GCCCATACCT TCATGCGCCG CACCGCCATT GGACTGTTCA TCGAGGCGAT TGGCACCAAT
CTTTCGGCAG CGAATTACAC AGGTCTTCGT AGCCGCGCGC TGATTCTTGC GGTTTATGCG
TTTGGCGGTC TCTGCGCGGG TATCGCCGGC ACCATCGCCG CTGCCGATAT TCGCGGCGCC
GATGCCAATA ATGCCGGGCT GTGGCTGGAA CTGGATGCCA TTCTTGCGGT CGTTATCGGG
GGCACGTCGC TTTTGGGCGG CCGATTTTCC ATTCCGATGT CGGTTTTGGG CGCAGTGATC
ATCCAGGCGA TGAATACCGG TATTCTGGTG TCCGGCCTGC CGCCGGAATT CAATCTCATC
GTCAAGGCCA GCGTGATCAT CATCATTCTG GTTCTGCAAT CGGACCGCGT CAGCGAGCTG
GTCAGTTTTT GGAAACACCG GCCAGCCGTC TTGCCCAAAA ACACTCAGGT TAAAATCCAG
GCTCCGGAGA AAACAGGATG A
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| Protein sequence | MKIRSMSSFL KPQFAALIAV LLLNWMVFPG FFDIAWRDGR LFGSLIDVLN RGAPVAILAI
GMTAIIATRG VDLSVGAVMA VAGAVAATCA VAGQPLVVTL AAALAVALAC GIWNGLLVAY
LGIQPFVATL VLMVAGRGLA QLVTSGSIVT FSDPALVFVG TGSLLGFPMP VVIALVLMLS
AHTFMRRTAI GLFIEAIGTN LSAANYTGLR SRALILAVYA FGGLCAGIAG TIAAADIRGA
DANNAGLWLE LDAILAVVIG GTSLLGGRFS IPMSVLGAVI IQAMNTGILV SGLPPEFNLI
VKASVIIIIL VLQSDRVSEL VSFWKHRPAV LPKNTQVKIQ APEKTG
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