| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5016 |
|---|
| Symbol | |
|---|
| ID | 7381181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 14222 |
|---|
| End bp | 14911 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648695 |
|---|
| Product | ABC transporter membrane spanning protein |
|---|
| Protein accession | YP_002546932 |
|---|
| Protein GI | 222106141 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCT CCTGGATAGG CAATTACTGG CCGTTGCTGC TGACCGGAGC ATGGCAAACC
CTCGCATTGC TGGTGATTTC TGTCGTTCTC GGATTTGTAA TGGCGATTGG CCTCGCTTTC
GCTCAGGTCA GCGGTGGACC GGTGACGCGG GTCCTTGCGC GCGGCTATTC GACGTTTTTT
CGTGGCACGC CGCTATTGAT CCAGCTCTGG TTGCTTTATT ACGGCGTCGG ATCATTGCTG
CCGATGATCC CGGGCATTCG TCAAAGTCTG ATCTGGCCGC TGTTGCGGGA AGGATTTTTC
TTTGCGGCGG TCAGTTTCAC GCTCAATTAC GCGGCTTATG AGGCCGAAGT TTTGCGCGGC
GCATTGCTGG CCGTGCCCAA GGGCGAACTT GAGGCGGGCC GTGCTTTCGG CATGGGACGC
TTCACGCTCA TTCGGCGGGT CTGGCTGCCG CGTGCTATCC GCATCGCCCT TCCCACCATC
GCCGGGGAAG TGGTCATGCA GCTGAAGGCC ACTCCCCTCG CCTTTACCGT GACGGTCATG
GATCTCTATG CGGTCGCCTA CAAGGTGCGC CAGGATACGC TGCTTGTCTA TGAACCGCTG
ATCGTCGTTA CCCTTTTCTA TCTCGCTATT ACTGCGATTA TTGCCCGTTG CTTCCGGATG
GTCGAGGCGC AGGTTCCAAT CCGGCGATAA
|
|---|
| Protein sequence | MDFSWIGNYW PLLLTGAWQT LALLVISVVL GFVMAIGLAF AQVSGGPVTR VLARGYSTFF
RGTPLLIQLW LLYYGVGSLL PMIPGIRQSL IWPLLREGFF FAAVSFTLNY AAYEAEVLRG
ALLAVPKGEL EAGRAFGMGR FTLIRRVWLP RAIRIALPTI AGEVVMQLKA TPLAFTVTVM
DLYAVAYKVR QDTLLVYEPL IVVTLFYLAI TAIIARCFRM VEAQVPIRR
|
|---|
| |