Gene Avi_5009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5009 
SymbolexoD 
ID7381176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp10581 
End bp11219 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content59% 
IMG OID643648690 
ProductexoD protein 
Protein accessionYP_002546927 
Protein GI222106136 
COG category[R] General function prediction only 
COG ID[COG3932] Uncharacterized ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATGA TGTCTCGACA GCACGGTCCT GCCGCAGGTG ACGACATTGT GCGGGGATCC 
GGCTTCCTGT TGGAGGTGCT GGAAACCGCT CGTTTGCGTG GTGGTATTTC CATTGGTGAA
CTGATCGGTC GGCGGGGTCG AATCGGGATA GCCTTCACCT TGCTGGTGCT TTGCCTGCCG
ACCCTGGTCC CCCTGCCCGG TCCTTTCGGG ATGGTTTTCG GCACCTGCCT GGCATTTGTT
GCCGTACAAA TGTTGTATGG TGCAGACCGG ATCTGGCTTC CGGGTTTCAT TGCGCGGCGA
ACGGTGTCGC TCAAGGTTGT GGAAACAATG GTGCGGCTTG GACGGCCCTG GGTGCTGAAA
CTCGAAAGCT GGCTGATCGC CGGGCGTCTG CCGTTTCTCA CGGGCAAGAC GGCGCGAATG
ATCCTGGCGC TGCCCATTCT CGTACTGGCA GTGCTGATCT CCCTGCCTAT CCCCTTTGGC
AATACCGCTC CAGCGCTGGC AATCATCTTG ATTGCTATCG CTCTTGCGGA ACGCGACGGC
CTCGTGGTGA TTTTTTCGCT CTTCGTTGCA GCTGGCGCCG GTGTCGTGAC CTATTATCTC
GTCACCGCCG CTGGAAACCT GCTGACCTGG GCATTTTAG
 
Protein sequence
MMMMSRQHGP AAGDDIVRGS GFLLEVLETA RLRGGISIGE LIGRRGRIGI AFTLLVLCLP 
TLVPLPGPFG MVFGTCLAFV AVQMLYGADR IWLPGFIARR TVSLKVVETM VRLGRPWVLK
LESWLIAGRL PFLTGKTARM ILALPILVLA VLISLPIPFG NTAPALAIIL IAIALAERDG
LVVIFSLFVA AGAGVVTYYL VTAAGNLLTW AF