Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5009 |
Symbol | exoD |
ID | 7381176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 10581 |
End bp | 11219 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643648690 |
Product | exoD protein |
Protein accession | YP_002546927 |
Protein GI | 222106136 |
COG category | [R] General function prediction only |
COG ID | [COG3932] Uncharacterized ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGATGA TGTCTCGACA GCACGGTCCT GCCGCAGGTG ACGACATTGT GCGGGGATCC GGCTTCCTGT TGGAGGTGCT GGAAACCGCT CGTTTGCGTG GTGGTATTTC CATTGGTGAA CTGATCGGTC GGCGGGGTCG AATCGGGATA GCCTTCACCT TGCTGGTGCT TTGCCTGCCG ACCCTGGTCC CCCTGCCCGG TCCTTTCGGG ATGGTTTTCG GCACCTGCCT GGCATTTGTT GCCGTACAAA TGTTGTATGG TGCAGACCGG ATCTGGCTTC CGGGTTTCAT TGCGCGGCGA ACGGTGTCGC TCAAGGTTGT GGAAACAATG GTGCGGCTTG GACGGCCCTG GGTGCTGAAA CTCGAAAGCT GGCTGATCGC CGGGCGTCTG CCGTTTCTCA CGGGCAAGAC GGCGCGAATG ATCCTGGCGC TGCCCATTCT CGTACTGGCA GTGCTGATCT CCCTGCCTAT CCCCTTTGGC AATACCGCTC CAGCGCTGGC AATCATCTTG ATTGCTATCG CTCTTGCGGA ACGCGACGGC CTCGTGGTGA TTTTTTCGCT CTTCGTTGCA GCTGGCGCCG GTGTCGTGAC CTATTATCTC GTCACCGCCG CTGGAAACCT GCTGACCTGG GCATTTTAG
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Protein sequence | MMMMSRQHGP AAGDDIVRGS GFLLEVLETA RLRGGISIGE LIGRRGRIGI AFTLLVLCLP TLVPLPGPFG MVFGTCLAFV AVQMLYGADR IWLPGFIARR TVSLKVVETM VRLGRPWVLK LESWLIAGRL PFLTGKTARM ILALPILVLA VLISLPIPFG NTAPALAIIL IAIALAERDG LVVIFSLFVA AGAGVVTYYL VTAAGNLLTW AF
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