| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5006 |
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| Symbol | |
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| ID | 7381174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 8635 |
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| End bp | 9459 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643648688 |
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| Product | hypothetical protein |
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| Protein accession | YP_002546925 |
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| Protein GI | 222106134 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3257] Uncharacterized protein, possibly involved in glyoxylate utilization |
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| TIGRFAM ID | [TIGR03214] putative allantoin catabolism protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGA ACAGCTATTT CACCAATTAT GGGGGCCTGC CGCCCCAGAC GCAGTTGCTT
TCGGGCAAGG CTGTTTTCAA AACCGCCTAT GCGGTCATTC CCAAAGGCGT GATGAGCGAC
ATCGTCACCA GTCTTCTGCC GCATTGGGAA AAAACCCGCG CCTGGATCAT CGCCAGACCC
ATGACAGGAT TTTCGGAAAC TTTTTCGCAA TATGTAATGG AAGTTCAACC CGGAGGAGGC
AGCATAAGAC CGGAGCCAGA TGCTCAAGCC CAAACAGCGA TCTTTGTAGT AGAAGGTGCG
TTTAGACTTA CTCTTGGAAC CACAGAGCAT GATCTTCGTG CCGGATCTTT CGCTTTTCTG
CCAGCCGGTT CGACATGGAC AGTTCTCAAC ACCAGCGACG CGCCTGCAAA ATTCCATTGG
GTTCGCAAGA CATTCCAAGC GGTAGACGGA TTGGAGCCAC CACCGGCAAT CTTCACCCAC
GAAGACGAGC ATGAAATTGC CATGATGCCT GACACCGGCG GGGCCTGGGG GACAACCCGG
TTCATCGATC CAAATGATAT ACGCTATGAC TTCCACCTGA ATATCGTCAG CTTCCAACCT
GGCGGCATCA TTCCGTTCAT GGAAACCCAT GTGATGGAAC ACGGCCTCTA TGTCCTGGAA
GGCAAAGCCG TCTACCGACT GAACGACGAC TGGGTCGAGG TGGAGGCCGG TGACTTCATG
TGGTTGCGCG CCTTCTGCCC ACAAGCCTGC TACGCTGGCG GTCCCGGCAG GTTCCGCTAT
CTGCTTTACA AGGATGTCAA CAGACACGCC CGTTTGTGGC CTTGA
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| Protein sequence | MTQNSYFTNY GGLPPQTQLL SGKAVFKTAY AVIPKGVMSD IVTSLLPHWE KTRAWIIARP
MTGFSETFSQ YVMEVQPGGG SIRPEPDAQA QTAIFVVEGA FRLTLGTTEH DLRAGSFAFL
PAGSTWTVLN TSDAPAKFHW VRKTFQAVDG LEPPPAIFTH EDEHEIAMMP DTGGAWGTTR
FIDPNDIRYD FHLNIVSFQP GGIIPFMETH VMEHGLYVLE GKAVYRLNDD WVEVEAGDFM
WLRAFCPQAC YAGGPGRFRY LLYKDVNRHA RLWP
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