Gene Avi_5001 details

Gene Information

• Locus tag: Avi_5001
• Symbol: repB
• ID: 7381169
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1546
• End bp: 2628
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648683
• Product: replication protein B
• Protein accession: YP_002546920
• Protein GI: 222106129
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins; [TIGR03454] plasmid partitioning protein RepB

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.868981
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGGAA AAAACCGAAA AAGCGAGTTG CGCGCGCTGT TTTCCGATCC AGGATCGGGG 
GCAAGTTCAG AGACTGCGGA ACCCTCTGTT TCGCAACCGA CGGCGTCCGG CGAACCGCGT 
AGAGCAGACA CTGTTGAAGA ACAGCCCCCC GCAGCGCCCG TGGCGCGCGC AGCCTCCGGG 
GCGATAAAGG CAATGGGATT GACGTTGTCC TCCATCACCA GAGAGGCGGA GGAAGCGCGT 
GCGTTGCGGC AGGCGATTGA TGAGGGCGAA AGGGTCATTT CCCTTGCTAC GGATAAGATC 
GATGCGTCCT TCGTTTCAGA TCGTCTGAGT GATGAGGAAC GAGACGATCC TGATTTCATC 
GCGCTGGTTT CCAGTATGCG CGAGAGTGGC CAGCAGGTTC CGATCCTCGT GCGGCGTCAT 
CCTCTTAATG ACGACCGCTA TCAGGTTGCC TATGGTCACC GTCGCTTAAG TGCTGCCAAG 
CGCCTCGGTA TCGCGGTCAA GGCGCTTATC CGGCCCTTGA GCGACGACGA GCTTGTGCTG 
GCGCAAGGCA AGGAAAATGC CGAGCGACGC AATCTCACCT TCATTGAGCG TGCCTTGTTT 
GCCAAGGCGT TGGCCGATCG TGGTTTTGAT AGAAAAGTCA TCGGTGAAGC GCTTTCGGTG 
CAAAAAAGCG AGTTGTCGCG GCTTATTCAG GTCGCGGAAA GCGTACCAGA GCGCTTTGCT 
CGTGCCGTTG GACCAGCTCC GAAGGCGGGT CGCGAGAGAT GGATGGCACT TGGCCAATTG 
CTTTCGAGCG AGCAGGGGCA GCTGAAAGCG GCTGGATTGG TGTCTACAGA CGGATTTCGG 
ATCGCAGCCA CAGATGAGCG GTTTCAAAAA CTATTCGATA CGCTGTCCGG TAAGGCTCCT 
GTGGAGCGCC CAGAACCTGA GGACATCAGG GGGCCTGATG GCCGTGTCTT CGCCCGTATT 
GGACGGCAAG GGCGGCGGCT GAAGATTGAA TTTCTGGCGG AGGCCAATCC GGGGTTTGTC 
GATCAGTTCG AAACGCGTCT GGCGGCGGCT TATGCCGCCT ATTTGGACGG CGAACACGAC 
TAG 

 

Protein sequence

MIGKNRKSEL RALFSDPGSG ASSETAEPSV SQPTASGEPR RADTVEEQPP AAPVARAASG 
AIKAMGLTLS SITREAEEAR ALRQAIDEGE RVISLATDKI DASFVSDRLS DEERDDPDFI 
ALVSSMRESG QQVPILVRRH PLNDDRYQVA YGHRRLSAAK RLGIAVKALI RPLSDDELVL 
AQGKENAERR NLTFIERALF AKALADRGFD RKVIGEALSV QKSELSRLIQ VAESVPERFA 
RAVGPAPKAG RERWMALGQL LSSEQGQLKA AGLVSTDGFR IAATDERFQK LFDTLSGKAP 
VERPEPEDIR GPDGRVFARI GRQGRRLKIE FLAEANPGFV DQFETRLAAA YAAYLDGEHD