Gene Avi_9896 details

Gene Information

• Locus tag: Avi_9896
• ID: 7380016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: +
• Start bp: 69538
• End bp: 71475
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648306
• Product: transcriptional regulator
• Protein accession: YP_002546543
• Protein GI: 222102402
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAAGA TCGTCAGCAT TCCGCTTAGC AAGCTTGATA CAGACCCGAA AAACGTCCGC 
AAAACCTACA AGGCCGAGGG CGTCGAAAGC CTCGCAGCTT CCATTCTCGC CAATGGCGTG 
GTTCAGAACA TCGTCGTGCG AAAGGCTCCC AAGGGCCGCT ATTTTGTTAC GGCGGGAGGG 
CGTCGGCGTG CTGCCCTGTT GCTGCTTATC GAGCGCGGCC AGATTTCAGC CGATTATGCC 
GTGAACGCAA TCGTAAAGAC CGCCGACGAG GCGACAGAGC TTAGCCTGAC CGAGAACGTG 
CAGCGGGAGG AAATGCACCC TGCCGACCAG TATGTCGCGT TTCAGGCCAT GGTCAACGAA 
GGTAAGGCAA TCGCGGATAT TGCTGCACGG TTCGGTGTGA CTGAAATCAT CGTTCGCCGC 
CGTTTGGCCT TAGCGAAGGT CTCGCCGGTC TTGCTGGACC TGTTTCGCAA CGACGAAATG 
ACGTTTGAGC AGCTGACCGC CTTCACGGTC TGCGATGATC ATGAGCGTCA GGAACAGGTC 
TGGGAGTCTC TCGATCGATG GAGCCGCGAT GTGTCGCGGA TCAAGTCGGC ACTGATGACA 
GACGAAATTG CCGGAACCGA CAAGCGTATC ACGTTCCTCG GCGGCCTCGA TGTCTATGAA 
CAGGCAGGAG GCGCGGTGCG CCGCGACCTG TTCGACGCGC AGGGCGGCGG GTTCGCGCTC 
GACGTAATTC TGGTTGAAAA GCTGGTCAGC GAGAAGCTGG CAGCGGTGGC CGAGCCGTTT 
TTGTCGCAAG GCTGGAAATT TGTCGAAACA TACATGCAGC GGCCCGACTG GATTTTCGGC 
GTCCCTCGCG TCTATCCGAA ACAGATCGAG CTTTCCCCTG ATGAACAATC GGAACGTTTG 
CGCCTGTGCG CCGAGCACGA TGAACTCGTA GAGCTCATGG ACCGTGACGA GGGCGAGGAA 
AGCCATTCCG AGCGCATCAA TGCCATCAGC GCACGACTGG ATGAACTGGA CTCGATGCAG 
GAAGTCTTTT CCGACGAGGA CAAGGCAAAA AGCGGGGTGG TCGTTTCCTT GGATTACTAC 
GGGAGGCCAG ATATTGCCGT TGGCATCCGC AAACCGGGTG ATGACGAACA GAGCGAGCAA 
GTGGAAACGG AGGATGACGA CAACGGGTCC GAGGCTTCCG AAAAGGTTGA GGAAATCGGC 
CCGCCGAAGA TCGTCCATTC TGCTGTGCTG GTCGAAGACC TGACAGCGCA GAAGACCGCA 
GCGCTGCGTG TCGAACTTGC CAACAATCCC GATGTTGCTC TGGTCAGCGT CGTTCACGCC 
ATGCTGCTCG ATCTTGTTTA TCCCGGCACC TATGGCCGTT CGCGAGGGAT GACCGCGTTG 
CAGATCGCCG TGACGCATGA GCGTCTGCAA GGTTCGATGA AAAGACCGGA TGCAAGTCGG 
GCGACCGAGG AATGGGACCG GATTGCCGAG AACTTCGGCT ATCATCTCCC CGGCGAGCCG 
GAAGACCTAT GGGAGCATCT CCTCGATAAG CCGCAGTCGG AGCTTCTGGG ACTGCTGGCG 
TATGCCGCAG CGCACACCCT TAACGCTGTC GAGACGAAAC ATAGCTTCCG CAAGGACGCA 
TGCGCCCACG CCGACCAGAT CGGGCGCACC CTAAAGGTAG AAATGACCGA CTGGTTCGAG 
ACGACAGCCG AAAGCTATTT TTCGAGCCTG AACCGCGCAG GCATTCAGGC GGCGGTGGCA 
GAAGTGAAAG GGGCTGATTT CGCATCGCGT GTCGCAAGTA TGAAGAAGGC CGAGGCGGCG 
GCCTTTGCCG AAACCGCAAT CAAAGGGTCC AACTGGCTTC CGTCGCCGGT GCGGATCGCG 
CCTGATCAGA AGGCCGAGAA CGAACAGACT GAACCCCGTT CAGAAGATGA GCAACCTTTC 
CCGATAGCAG CGGAATAG 

 

Protein sequence

MTKIVSIPLS KLDTDPKNVR KTYKAEGVES LAASILANGV VQNIVVRKAP KGRYFVTAGG 
RRRAALLLLI ERGQISADYA VNAIVKTADE ATELSLTENV QREEMHPADQ YVAFQAMVNE 
GKAIADIAAR FGVTEIIVRR RLALAKVSPV LLDLFRNDEM TFEQLTAFTV CDDHERQEQV 
WESLDRWSRD VSRIKSALMT DEIAGTDKRI TFLGGLDVYE QAGGAVRRDL FDAQGGGFAL 
DVILVEKLVS EKLAAVAEPF LSQGWKFVET YMQRPDWIFG VPRVYPKQIE LSPDEQSERL 
RLCAEHDELV ELMDRDEGEE SHSERINAIS ARLDELDSMQ EVFSDEDKAK SGVVVSLDYY 
GRPDIAVGIR KPGDDEQSEQ VETEDDDNGS EASEKVEEIG PPKIVHSAVL VEDLTAQKTA 
ALRVELANNP DVALVSVVHA MLLDLVYPGT YGRSRGMTAL QIAVTHERLQ GSMKRPDASR 
ATEEWDRIAE NFGYHLPGEP EDLWEHLLDK PQSELLGLLA YAAAHTLNAV ETKHSFRKDA 
CAHADQIGRT LKVEMTDWFE TTAESYFSSL NRAGIQAAVA EVKGADFASR VASMKKAEAA 
AFAETAIKGS NWLPSPVRIA PDQKAENEQT EPRSEDEQPF PIAAE