Gene Avi_9846 details

Gene Information

• Locus tag: Avi_9846
• ID: 7379945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: +
• Start bp: 36644
• End bp: 37321
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 643648271
• Product: two component response regulator
• Protein accession: YP_002546508
• Protein GI: 222102367
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGATAC TGGTCATCGA AGACGACCAA ACGACGAGAA AATACCTTGT GAAGGGCTTA 
AGTTCCGCTG GGCATTCGAT AGACTGCATT GGGGATGGTC GTGAGGGGCT CTCAGCAGGC 
TTGGACACGC GCTATGATAT TCTAATTGTT GATCGGATGA TTCCCGGCCT CGACGGCTTA 
AACCTTGTCA AAAGTTTGCG TGCAGCATCA GTGCGTACCC CTGTCTTGTT TCTGACGGCA 
ATGAGTGGCG TGGATGATAG GGTGGAGGGT CTTGAAGCCG GGGGTGACGA TTACCTCGTT 
AAGCCGTTCG CGTTTTCGGA ATTAGTCGCT CGTATAAACG CCCTCGTTCG GCGCCCCCCG 
ATTGCCGCTG AGAAGACCAA GCTGCGGGTC GGCGACCTTG AAATGGATCT CGTCGCTAGG 
ACTACTTCAC GTGCCGGACA ACTCATTGAA CTATTGCCGC GAGAGTTTTC ACTGCTTGAA 
TTACTGATGA GGAACGAGGG ACGAGTACTC ACAAAAACGA TGTTTCTTGA AAAAATATGG 
AACTTTAATT TTGATCCTCA AAGCTCAGTC GTCGAGACGC ACATCAGCCG GCTCCGGGCA 
AAAATAGATA AGCCTTTCAG CACATCACTT TTGCATACCG TCAAAAACAC TGGATACACG 
TTGCATGCTC GCGGGTAG 

 

Protein sequence

MKILVIEDDQ TTRKYLVKGL SSAGHSIDCI GDGREGLSAG LDTRYDILIV DRMIPGLDGL 
NLVKSLRAAS VRTPVLFLTA MSGVDDRVEG LEAGGDDYLV KPFAFSELVA RINALVRRPP 
IAAEKTKLRV GDLEMDLVAR TTSRAGQLIE LLPREFSLLE LLMRNEGRVL TKTMFLEKIW 
NFNFDPQSSV VETHISRLRA KIDKPFSTSL LHTVKNTGYT LHARG