| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9821 |
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| Symbol | avhB4 |
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| ID | 7379962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011986 |
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| Strand | - |
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| Start bp | 19318 |
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| End bp | 21777 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643648251 |
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| Product | type IV secretion protein AvhB4 |
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| Protein accession | YP_002546488 |
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| Protein GI | 222102347 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAG TCATCAAAGA AGAGCTAGGA TTTGGGAAGG TCGCCGGAAA CGAGCGGCCT
ATGTCCGTTC ATATTCCCTA CATGCGGCAT GTCTCGGACA CGGTGATAGG TCTCGAGAAT
GGATCACTCG CCAGTGTCAT CAAGCTCGAC GGCTTGTTTT TCCAGACCGA AGACCAGGCC
GAATTGAATA TGCGATCAGT CGTCCAGAAC ACGATGATAC GCGCGCTCGG CTCAAGCCGG
TTTTCCCTAT GGTCAACCGT GATCCGTCGC GAGGTCGAGA CCGAGATCGG CGGAACGTTT
GATCAATCAT TCTGCGACAT CCTGAATACG CGATACATGG GTCAGCTTCG CAAGAAGCGC
ATGTTCACCA ACGAGATCTA CTTGACGATT GTCCGTTCGG GCATGCGCGG CGCGCTTGGT
GTTGGCGACT CTCTCAAGCG GATTTTTACG CAGTCCAACA AGGACGCCAA AACACAAGCC
ACGCGCGAAG AGGTAACGGA CCTAGAGGAA CTGATCGGGA ATATCGTCCG TGAACTGAGT
AAATATGGAG CCCGCTCGCT CGGCATAACC TATCGGAAGA AGTCCGATGA TATTGCAAAG
ATCGAGGGGC AGGAGGAAGA GACCAAGGGC GAACCGTATT CCGAGCCCTG CGAATTCTTC
AATTCTATCC TCACGGGGAG TGTGTCTCGA AAGATGCGAC TGCCGCGCAT GGGCATTCGC
AACTTCATTG GAACATCTCG TCTCCACTTC GCCAAGCGCG CCTTTCACGC GCAAGCCGCC
GTGGACGAAG ATTCGCGGTA TGGCGCACTG CTGTCCATCA AGGAATACCC TCCTTTCACT
GGACCTGGCA TGTTGGACGG ACTGTTACAG GTGAACCATG AGTTCATCCT GACGCAGTCA
TTTACCCTTG CAGACAAGCC AATTGCGCAG GAGCGCATAA CGCGCCTTCA GAGGCAAATC
CGTGCCTCGG ATGAAGCTGG GACGTCTGTA GAATCTGACA TCAATTTTGC TCTCGACAGT
ATGCTGAATC AGGAAGCCGT GTTTGGCTTC CACCATTTTT CGCTACTTTG CATTTCCCGG
GACCTCGAAG GCTTGAGCCG CTGCGTTTCG GAACTTGGTG CATGCCTCAC GGACATGAAT
ATCAACTGGC TGCGTGAAGA TCTCAATCTT GAGGCAGCGT TTTGGGCGCA GTTGCCCGGT
AACCATTCCT ATATTGCTAG AAAGGCGATG CTCTCCAGCT CGAACTTCTC GGGCCTGTCA
TCAATGCACA ATTTCGCCAG TGGTCAGGCG GAACGTACGC ATTGGGGCCT TCCCATCACG
ATCCTTGAGA CGACATCGCA GACGCCCTAC TGGTTCAATT TCCACCGCCG CGATATCGGG
CATTTTACCG TCACAGGACC GACCGGCTCG GGTAAAACTG TCGGTTTGAG TTTCCTGCTC
GCGCAGGCCA TGCGAGTTTC CCCAACACCC CGCGCCGTCT TTTTTGATAA GGACCGCGGA
GCCGAAATCT TCGTTCGAGC CATCGGCGGA TCTTACGAGA TCCTTTCCCC GGGTACACCA
ACTGGATTCA ATCCGCTCCA GTTGGAGAAC ACGGGACCAA ACAGAGAATT TCTTCAGCGC
CTTCTCAAGG CGATGCTCGG TGGACGTGAT CGCCGCGACT TCACCCAGGA AGATGAAGAT
ATCATAGAGC GCGCTGTGGT CCGCCTCATG GAAGAACCGG CACAACAGCG AAACCTCACC
AACCTTGGCA ACCTGCTTAT GGGCCGTGCC CGTGCTGATG CCAATGACCT CTATTCTCGA
CTTCGTCCTT GGACCGAGGG CGAAAAGGCT TGGCTCTTTA ACGCTCCACA CGATGTGCTG
TCCTTCTCTG GCCGGACGGT GTTCGGCTTT GACATGACCA GTATTCTTGG GAACGAAGAA
CTGCGGACGC CCGCCCTCAT GTATCTCTAC CATCGGCTTG ATGAACTGCT GGATGGCAAT
CCGGTCATGT TCTTCATGGA CGAAGGCTGG CAGCTGCTCC TCGATGAAAC TTTCAGCGCG
TTCATTGTCG ACAAAATGAA GACCATTCGT AAGCTCAACG GCATCGTGGG CTTTGGCACT
CAATCGGCCG CCGACATTGC AAAGTCGAAG GTCTCTCACA CGCTCATTGA GCAGTCTTCC
ACGAACATTC ATTTCCCGAA CCCGCGTGCA GACGAAGAGA GCTACATCAA GCGCTTCGGT
CTCACGGTGA AGGAATACAA CTTCATCAAG AACACCCCGC CCGAAAAGCG AACCTTCCTG
ATCAAGCACG GCAATGACTC AGTCATCGCC CGGCTCGACC TTTCGAGCAT GCCCGATCTC
GTCAAGGTCC TGTCCGGGCG TAAGGAGACG ATCGAGGAGT GCGCCGCACT CCGCGAACAA
TATGGAGACG AGCCGGAAAA CTGGTTGGCT AAATTTTGCG GATGGGAGAA TGCTGAATGA
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| Protein sequence | MLKVIKEELG FGKVAGNERP MSVHIPYMRH VSDTVIGLEN GSLASVIKLD GLFFQTEDQA
ELNMRSVVQN TMIRALGSSR FSLWSTVIRR EVETEIGGTF DQSFCDILNT RYMGQLRKKR
MFTNEIYLTI VRSGMRGALG VGDSLKRIFT QSNKDAKTQA TREEVTDLEE LIGNIVRELS
KYGARSLGIT YRKKSDDIAK IEGQEEETKG EPYSEPCEFF NSILTGSVSR KMRLPRMGIR
NFIGTSRLHF AKRAFHAQAA VDEDSRYGAL LSIKEYPPFT GPGMLDGLLQ VNHEFILTQS
FTLADKPIAQ ERITRLQRQI RASDEAGTSV ESDINFALDS MLNQEAVFGF HHFSLLCISR
DLEGLSRCVS ELGACLTDMN INWLREDLNL EAAFWAQLPG NHSYIARKAM LSSSNFSGLS
SMHNFASGQA ERTHWGLPIT ILETTSQTPY WFNFHRRDIG HFTVTGPTGS GKTVGLSFLL
AQAMRVSPTP RAVFFDKDRG AEIFVRAIGG SYEILSPGTP TGFNPLQLEN TGPNREFLQR
LLKAMLGGRD RRDFTQEDED IIERAVVRLM EEPAQQRNLT NLGNLLMGRA RADANDLYSR
LRPWTEGEKA WLFNAPHDVL SFSGRTVFGF DMTSILGNEE LRTPALMYLY HRLDELLDGN
PVMFFMDEGW QLLLDETFSA FIVDKMKTIR KLNGIVGFGT QSAADIAKSK VSHTLIEQSS
TNIHFPNPRA DEESYIKRFG LTVKEYNFIK NTPPEKRTFL IKHGNDSVIA RLDLSSMPDL
VKVLSGRKET IEECAALREQ YGDEPENWLA KFCGWENAE
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