Gene Avi_9815 details

Gene Information

• Locus tag: Avi_9815
• Symbol: avhB8
• ID: 7379957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: -
• Start bp: 15533
• End bp: 16225
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643648246
• Product: Type IV secretory pathway component VirB8
• Protein accession: YP_002546483
• Protein GI: 222102342
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3736] Type IV secretory pathway, component VirB8

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATT CAAATGAAGC TCTCCGGAGC TATTTTCAAG ACGGCGACAA GTGGGAACAG 
GAGATTGTAA AAAAGGCAAA TCGCTCAAGG ACATTCGCTT GGTTTATCGC CCTGATAATG 
AGCGCCATCA CCCTTATGTC GCTCGGGACG CTGGTGATGT TGGTTCCGCT CAAGACCTTC 
GAGCCCTACA TCGTCGAGGT CGATAAAAAT ACAGGTTACA TCGAGGTCAA GACCGGGCTC 
ACGCGCTCGG CAAACCTCAC TGACCAGCAG GCTGTCACTC AGGCCAATGT TGTCCGGTAC 
ATCCGCTCAC GCGAGGGCTA TGACCCGTTT GCCATCCAGC AAAACTTTGG AATTGCCGCG 
CTTCTTTCCA CGGCCGATGC GGCCAAGGAG CTCCAAGACG AATGGAGCGC CGCTAATCCG 
AACAACCCGG GCAGGCGTTT GGGCAGAAAC AAGAAAATCA CCGTTGACGT AAAGTCGGTC 
ACGTTCTCGA ACGCTAGCAC TGCGCTCGTC CGGTTCTCGA CAACGGAGAG TTCTGAAAGT 
GACAATATCA CCCGGCACTA CATCTCTGTT GTCCGCTTCC GTTATACGGA CACACCGGAG 
CGCAACGATT GGCGGTTTGA AAACCCCCTT GGCTTCCAGG TGTACAACTA CCGTCGCGAT 
CAGGAAACGG TTACGCCGGG AGCAGCAGGA TGA 

 

Protein sequence

MADSNEALRS YFQDGDKWEQ EIVKKANRSR TFAWFIALIM SAITLMSLGT LVMLVPLKTF 
EPYIVEVDKN TGYIEVKTGL TRSANLTDQQ AVTQANVVRY IRSREGYDPF AIQQNFGIAA 
LLSTADAAKE LQDEWSAANP NNPGRRLGRN KKITVDVKSV TFSNASTALV RFSTTESSES 
DNITRHYISV VRFRYTDTPE RNDWRFENPL GFQVYNYRRD QETVTPGAAG