| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9802 |
|---|
| Symbol | repC |
|---|
| ID | 7379947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011986 |
|---|
| Strand | + |
|---|
| Start bp | 2673 |
|---|
| End bp | 3887 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643648236 |
|---|
| Product | replication initiation protein RepC |
|---|
| Protein accession | YP_002546473 |
|---|
| Protein GI | 222102332 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAG GAAATATAAC GACGCCCTTT GGGCGGCGAC CGATGACACT CGCTCTGGTG
AAACGGCAAA TCTCCGTCTC CGAGATCAAG CAGGGCAAGA GTGCTGACAA ATGGATGATC
TTTCGCGACG TCAAAGAAGC GCGCGAGCTC TACAAGCTGC CTCCTTATTC GATAGCGGTG
CTTGATGCAC TGCTGACGTT CTATCCGGAA AAAGAACTGC GCCAGGACGC GCAGCTGGTG
GTATTTCCCT CCAACGCGCA GTTGATGCTA CGCGCCAATG GAATGTCCGG AGCAACCCTT
CGGCGGCATC TAGCGATCCT TGTCGATGCA GGGATGATTG TCCGCAAGGA TAGCCCCAAT
GGCAAACGAT ACGCTCGAAA AGATGGGGCA GGGGAGATCG AACGCGCATT CGGATTTGAT
CTTTCCCCGC TTTTGGCTCG ATCCGAGGAG TTCGCGTTGG CCGCTCAACA GGTGGCGACC
GATCGCCGCG AATTCCTCAA GGCCAAGGAG AGCCTTACCC TGTGCCGGCG GGACGTTCGA
AAGGTTATCA GCGCCGCGAT TGAGGAGGGG GCTGAAGGCG ACTGGGAGGC GATAGAGGCT
GTCTACCTCG ACATCGTCCG ACAGATTCCC CGCACCCCGT CAGCTTCCGA CCTGGCGAAA
ATCCTAGACG AGATGCAGCT TCTTTACGAA GAGGTCGTCA ACCGGCTGGA TTTGATGGGT
AATTCAGATG ATGTAAGCAC CAATGGTGCT CACACAGAGC GCCACATACA GAATTCAAAA
CCCGACTCCA TCATTGAATT TGAACCTAGC TACGAAAACG AGCAGGGCGC AAAGCCGAGT
GAAATCAGTC GACCGAAGAG GGAGCCGATA AAGGCGTTCC CACTTGGTAT GGTGTTGAGG
GCTTGCCCGC AGATAAGCGA TTACGGTCCG GACGGCCAGA TCGCAACTTG GCGAGAGCTG
ATGTCAGCCG CTGTTGTCGT TCGTTCGATG CTCGGCGTCA GCCCGAGCGC CTATCAGACC
GCCTGCGAAA CCCTGGGACC CGAGAATGCG GCCGCTGTCA TGGCCTGCAT TCTGGAGCGG
GGGGGCCAGA TCAATTCTGC AGGCGGTTAC CTGCGTGATC TCACGCAACG GGCCGGGAAG
GGTGAGTTTT CGCTAGGTCC GATGCTGATG GCATTGATGC GCGCCAATAC TGGGAATGAT
CGACAGGCGG GATGA
|
|---|
| Protein sequence | MQTGNITTPF GRRPMTLALV KRQISVSEIK QGKSADKWMI FRDVKEAREL YKLPPYSIAV
LDALLTFYPE KELRQDAQLV VFPSNAQLML RANGMSGATL RRHLAILVDA GMIVRKDSPN
GKRYARKDGA GEIERAFGFD LSPLLARSEE FALAAQQVAT DRREFLKAKE SLTLCRRDVR
KVISAAIEEG AEGDWEAIEA VYLDIVRQIP RTPSASDLAK ILDEMQLLYE EVVNRLDLMG
NSDDVSTNGA HTERHIQNSK PDSIIEFEPS YENEQGAKPS EISRPKREPI KAFPLGMVLR
ACPQISDYGP DGQIATWREL MSAAVVVRSM LGVSPSAYQT ACETLGPENA AAVMACILER
GGQINSAGGY LRDLTQRAGK GEFSLGPMLM ALMRANTGND RQAG
|
|---|
| |