Gene Avi_9800 details

Gene Information

• Locus tag: Avi_9800
• Symbol: repA
• ID: 7380026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011986
• Strand: +
• Start bp: 206
• End bp: 1435
• Gene Length: 1230 bp
• Protein Length: 409 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643648234
• Product: replication protein A
• Protein accession: YP_002546471
• Protein GI: 222102330
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG1192] ATPases involved in chromosome partitioning
• TIGRFAM ID: [TIGR03453] plasmid partitioning protein RepA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGGTTTT TCGCGGTGAA TGTCGCACAT ATCGAAAAGA CAGCGATTTC TGAAGTTGAC 
CAACTCATCA TTGGTCAGGC GAAGGAACTG TCTGAGAAGT TAAAGCAGCA CCGGCTCGAG 
ATGTATCCTC CACGGGCCAT GAAAGATCTG CGGGAGTTTC AGCTCGCTGA AGCCGCACGG 
TATGTAGGCG TTACTAGTGG CTACCTAAGG AATCTCTCGC TAGAGGGAAG GGGGCCAACG 
CCTCAAGTTA CGCCATCAGG CCGCAGATCC TACACCGCGG AGCAGATGGA GGAGATGCGT 
CAGTTTCTTG AGCAAAGCGC CCGACCTGGA ACCCACTACA TACCGCATCG CCGAAATGGA 
GAAAGGCTTC AGGTAATTGC CGTCGTGAAT TTCAAGGGCG GCAGTGGTAA AACCACGACT 
GCAGCACACT TAGCGCAGTT CCTCGCTCTG TCTGGGCACC GTGTCCTGGC CGTTGATCTC 
GATCCACAGG CGTCTCTGTC GGCCATCCAT GGCTTTCAGC CCGAGTTTGA CGTGCATGAA 
AACGAGACGA TTTATGGCGC CATCCGCTAT GATGATCAGC GCCGTCCCCT TCGAGATATA 
ATCCGCAAGA CGAACTTCCC AAATCTTGAT CTTGTCCCGG GCAATCTCGA GCTGATGGAA 
TTCGAGCATG ATACACCACG TATCCTAGCG CAGGGGCAAG GCAGGGACTA CGGGCGCATC 
TTTTTCGCTC GCCTTGATGA AGCATTGACG TCAGTCGCAG ACGACTACGA CATTGTTCTT 
ATCGATTGCC CGCCCCAGCT TGGCTTTCTC ACCATGAGTG CGATCTGTGC GGCGACCGCT 
GTTCTCATTA CCGTGCACCC GCAGATGCTT GACGTCATGA GCATGTGCCA GTTTCTGCAG 
ATGCTTGGGG ATATACTCAG CACGTTGAAG GATGTCGGCG GAAACATGAA CCTGGACTGG 
CTTCGCTACC TCGTCACCCG GCATGATCCT CAGGACGGTC CCCAGGCACA GATGGTGGCC 
TTCATGCGTT CAATGTTCAA AAATCATGTG CTGTTGAATC CAATGGTCCG CAGCGTAGCG 
ATTTCAGATG CCGCTATGAC AAACCAGACA CTGTACGAGG TTGAGCGTAG CGCTTTCACA 
AGAGCGACCT ATGACAGAGC GATGGAAGCG ATGGATGCTG TAAATGGCGA GATCCTCGAG 
TTGATCAACA AAGCGTGGGG AAGGAAATGA 

 

Protein sequence

MRFFAVNVAH IEKTAISEVD QLIIGQAKEL SEKLKQHRLE MYPPRAMKDL REFQLAEAAR 
YVGVTSGYLR NLSLEGRGPT PQVTPSGRRS YTAEQMEEMR QFLEQSARPG THYIPHRRNG 
ERLQVIAVVN FKGGSGKTTT AAHLAQFLAL SGHRVLAVDL DPQASLSAIH GFQPEFDVHE 
NETIYGAIRY DDQRRPLRDI IRKTNFPNLD LVPGNLELME FEHDTPRILA QGQGRDYGRI 
FFARLDEALT SVADDYDIVL IDCPPQLGFL TMSAICAATA VLITVHPQML DVMSMCQFLQ 
MLGDILSTLK DVGGNMNLDW LRYLVTRHDP QDGPQAQMVA FMRSMFKNHV LLNPMVRSVA 
ISDAAMTNQT LYEVERSAFT RATYDRAMEA MDAVNGEILE LINKAWGRK