Gene Avi_9261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9261 
SymboltrbL 
ID7367859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011984 
Strand
Start bp204407 
End bp205603 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content66% 
IMG OID643644422 
Productconjugal transfer protein TrbL 
Protein accessionYP_002542719 
Protein GI222083316 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3846] Type IV secretory pathway, TrbL components 
TIGRFAM ID[TIGR02783] P-type conjugative transfer protein TrbL 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.24282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAGTCG TCCGCCCGTC CCGCAAGCTC GAAACCGCAT TCATCGTCGT CGCGATCCTG 
GCTCTCGCGA CCGCGCCGGC GCTCGCCCAG CAGGGCTCCG TCCTCACCAC GTTGGAGAAC
CAGGTCGTCA CCGCCGCCAA GGGGTGGGAG ACGACGATCA TGAACGCGGC GCGGTCGCTG
TTCTGGATTC TCGCAGGGAT CGAGATCGGC ATCGCGGCCG TGTGGCTCGC AATCAACGCC
GCATCGCTTG ACGCCTGGTT CGCCGAGCTC GTTCGTCGGA TCATGTTCAT AGGTCTGTTC
GCCTTCATCC TCGATCGCGG CCCGGCGCTC GCGAAGGCGG TGGTCGACAG CCTGTTCCAG
ATCGGCGCTG GCGGCGGGTC TGCCTCACCG GCCAACATCT TCGACGCCGG CATCCGCGTC
GCATCGAAAA TGTCCGAGCA GGCAAAGTTC GGGCTGTGGG AAGACAACGC GCTGGCGATC
GCCGCGGTCT TCGCGATGAT CGTGGTCGTC GTCGCGTTCT CGCTCGTCGC CGCGATCTTC
GTCGCCGTCA TGGTCGAGAT GTATGTCGGC TTGCTCGCCG GCATGATCAT GCTCGGGCTC
GGCGGCAGCT CGTACACCAA GGATTTCGCG GTCCGCTACC TGGTCTATGC CTTCTCCGTC
GGCATGAAGC TGATGGCGCT CGTCATGATC GCCAAGATCG GCTCCGACAT TCTGATCGGG
CTGGCCGAGG CGCCGACGGC GACCTCCGAC CAGTTCATCA CCACGATCGG CATCGCCGGC
ATCTCCGTCG TTGTGTTCAT CATCGCCATG TATGTGCCGC CGATCATCCA GGGTGTCGTG
CAGGGCGCGT CGGTCTCTGG CGGCATGGAG GTGATCCGCC ATGGTGGCCA GACGGCCGCC
TTCGCTGCCG GCGGCGCCTT CCTCGGTGCG GGCGCCGCGA TGAAGGGGGC AGAATCAGCG
AGCTCGGCGA GGGCGGGGGG CTCGTCCCTG GCGGGAGCGG CTCTTCGCGG CATGGCGTCC
TGCATCGGCA ATGCGGGTTG GGCAGCGGGA TCGGCCGCGA AGGAGAAGGC GATCGCTTCA
CCCGGAGCCT ATGCCGGCTC GTTGCTCGGC CTCGCCAACG CCAAGCTCGA CCAGACGCGG
CAATCCGGCA GAACCTCGGC GCCTCCTCCG CCTCCACCCG TCAACGAAAA CAAGTAA
 
Protein sequence
MVVVRPSRKL ETAFIVVAIL ALATAPALAQ QGSVLTTLEN QVVTAAKGWE TTIMNAARSL 
FWILAGIEIG IAAVWLAINA ASLDAWFAEL VRRIMFIGLF AFILDRGPAL AKAVVDSLFQ
IGAGGGSASP ANIFDAGIRV ASKMSEQAKF GLWEDNALAI AAVFAMIVVV VAFSLVAAIF
VAVMVEMYVG LLAGMIMLGL GGSSYTKDFA VRYLVYAFSV GMKLMALVMI AKIGSDILIG
LAEAPTATSD QFITTIGIAG ISVVVFIIAM YVPPIIQGVV QGASVSGGME VIRHGGQTAA
FAAGGAFLGA GAAMKGAESA SSARAGGSSL AGAALRGMAS CIGNAGWAAG SAAKEKAIAS
PGAYAGSLLG LANAKLDQTR QSGRTSAPPP PPPVNENK