| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9249 |
|---|
| Symbol | proC |
|---|
| ID | 7367850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011984 |
|---|
| Strand | + |
|---|
| Start bp | 195555 |
|---|
| End bp | 196457 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643644413 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_002542710 |
|---|
| Protein GI | 222083307 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0562195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGAT TTCGAGGTTC GGGCTTGTCT CCACAAGATC CGACAGCACG AACAGCCATG
GCATCGAAAA AGAGCGCAAG AGAAGGACTT GGACGGGATA TGAACATTAT TTTGGTCGGC
GCGGGGAACA TGGGTTTCTC CATGCTACAG AAATGGCTGG CAGATATGGA GCACCGTTTC
TACGTTGTCG AACCCGTGGG CGCGCTGCGG AAGCGCGCCT TGGATGCGGG TGCGGATGCT
TTTGCAACGG CCGAGGACCT CCCCGGGGTC TTTGAAGCCG ATGTGGTGGT CGTAGCAACG
AAGCCTCAGG CCGTTCCCGA GGCGGTGGCG AAGTACGCTC CTTATATCTC CAAGGAGGGG
CTATTCATCT CGGTCGCTGC AGGTGTCGAC ATAAAGACTA TGGTCGCAAA GGCAGGTCGC
CAGTTCGCGA TTGTCCGCTG CATGCCTAAC ACCGCCGCCG CGATTGGCGA AGGGATGATA
GTATGCTGTC CGAGCGTACA AACGACTCTT TCACAGCGGG ATCTGACTGG TCAGCTCATG
TCGGCCATAG GTAAGGTGGC GTTCGTAAAC GACGAAATTC ACATGGACGC AGTTACGGCC
GTGTCTGGCT CCGGTCCTGC CTATCTTTTC CACTTCATCG AAGCATTGGC CAAAGCTGGC
GAAACCGCAG GCCTTGATCC GGAGCTGGCG ATGACGCTTG CGAAGCAGAC TGTCTTGGGC
GCTGCGAGGC TGGCGAGCGA AAGCGACGAG CCTCCGACTA CACTGCGCGA GCAGGTCACA
AGTCCCAATG GAACCACCGC AGCAGCGCTC TCCATCCTCA TGGACTTGGA AGACGGACTG
ACCAGCTTGG TTACGAAGGC CGTGGCGGCA GCGAAAGCGC GATCCATCGA ACTAGGACGC
TAG
|
|---|
| Protein sequence | MPGFRGSGLS PQDPTARTAM ASKKSAREGL GRDMNIILVG AGNMGFSMLQ KWLADMEHRF
YVVEPVGALR KRALDAGADA FATAEDLPGV FEADVVVVAT KPQAVPEAVA KYAPYISKEG
LFISVAAGVD IKTMVAKAGR QFAIVRCMPN TAAAIGEGMI VCCPSVQTTL SQRDLTGQLM
SAIGKVAFVN DEIHMDAVTA VSGSGPAYLF HFIEALAKAG ETAGLDPELA MTLAKQTVLG
AARLASESDE PPTTLREQVT SPNGTTAAAL SILMDLEDGL TSLVTKAVAA AKARSIELGR
|
|---|
| |