Gene Avi_9193 details

Gene Information

• Locus tag: Avi_9193
• Symbol: traH
• ID: 7367731
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011984
• Strand: +
• Start bp: 150465
• End bp: 151091
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643644376
• Product: conjugal transfer protein TraH
• Protein accession: YP_002542673
• Protein GI: 222083270

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.19539
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGACG TCGCCCTCAT TCAGCAATGC GCCGATCCGG GCCTGAAGCC CGCCGTCGTC 
GAACAGTTCA TCGAGCGGGC AGGGTCGCAG AATCCGCTGG CTGTTACGGT CCGCTCGGGC 
AACCGTGTCG TGCTCGTCCC GAAGCCCGCG ACGGCGGACG AGGCAATGAA CCTCATCGGC 
CAGCATGTCG GCCGAAACGT CGTGCGCGTC GGTGTCACGC AATATCCGGC CGGGCTCGGT 
GTCGTGGAAG CCGGCCAGCT AAAATCCGAC CTTGTCGATG TCTGCGCCAA TCTTCGGATG 
GGAACCGCTC TGTTCGCGAA GGTCTATCGC ATCGTCACCA AATGGTACGG CAATCCGACC 
GACAAGGACG TGCTGCCGCA GGTGTTCGAC GATGCGATCA TTGCCTGGCA GACCGGGTAC 
TTCGAGGGGA CAGCCGTGTT CCGGGCGGAA GATCCGGGTG ATGTAAAGGT CGCCCAGCCG 
GAGCCGGTCC GGCGGGATGG CGCCGACACA CAAGCTGGCC TTCCGGAAAA TGAAGCCAAA 
CCCGAAGCGC CAGCCGAGGC TGCTGCATCC GATCCGAACA CAGCAGGGAT CAGAATCGAC 
CTTTCCGGCA TTGGCGCAAA ACGTTAA 

 

Protein sequence

MVDVALIQQC ADPGLKPAVV EQFIERAGSQ NPLAVTVRSG NRVVLVPKPA TADEAMNLIG 
QHVGRNVVRV GVTQYPAGLG VVEAGQLKSD LVDVCANLRM GTALFAKVYR IVTKWYGNPT 
DKDVLPQVFD DAIIAWQTGY FEGTAVFRAE DPGDVKVAQP EPVRRDGADT QAGLPENEAK 
PEAPAEAAAS DPNTAGIRID LSGIGAKR