| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9189 |
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| Symbol | traA |
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| ID | 7367728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | + |
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| Start bp | 145321 |
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| End bp | 148692 |
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| Gene Length | 3372 bp |
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| Protein Length | 1123 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643644373 |
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| Product | Dtr system oriT relaxase |
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| Protein accession | YP_002542670 |
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| Protein GI | 222083267 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.136231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTCAGAC GCCCGGTATG GCCTGGCCGT TCCCGACGAA CGAGGTTCGA ACCGGGAGCT
TTTATCGCCG TGGCCATCGC CCACTTCTCA GCCAGCATCA TCAGCCGCGG CGACGGCCGC
AGCGTGGTGC TGTCTGCGGC CTACCGGCAC TGCGCGAAGA TGGAATACGA GCGTGAAGCC
AGCACCATCG ACTACACGCG CAAGCAGGGT TTGCTGCATG AGGAGTTCAT GCTTCCTGCC
GATGCCCCGA AATGGGCGAA AGCGCTCATT GCGGATCGCT CTGTTTCCGG CGCCGTCGAA
GCCTTCTGGA ACAAGGTCGA GGCTTTCGAA AAACGCTCCG ACGCGCAGCT GGCCCGCGAC
CTGACGATTG CACTGCCGCT GGAGCTTACA CCCGAGCAGA ACATCGCCCT GGTCCGTGAT
TTCGTGGAGA AACATATCCT GGGGAAGGGC ATGGTCGCCG ACTGGGTCTA TCACGACAAT
CCCGGCAATC CGCACATCCA CCTGATGACC ACATTGCGGC CGCTGACCGA GGACGGATTC
GGGGCCAAGA AGGTAGCGGT CATTGGTGAG GACGGCCAGC TGGTTCGCAC GAAATCCGGC
AAAATCCTCT ACGAACTCTG GGCCGGTTCG ACGGACGATT TCAACGCCCT GCGCGACGGC
TGGTTCGAAC GGCTGAACCA CCATCTGGCC CTCGGCGGCA TCGATCTCAG GATCGATGGC
CGTTCCTACA AAAAGCAGGC CATCGAGCTC GAGCCGACCA TTCATCTAGG CGTAGGCGCC
AAGGCAATCG CGCGGAAAGC GGAACAACAG GGTGTTCGGC CGGAGCTCGA AAGGATCGAA
CTGAACGAAG AACGCCGCTC GGAAAACACC CGCCGCATCC TCAAAAATCC AGCCATCGTG
CTCGACCTGA TCATGCGGGA AAAGAGCGTC TTCGATGAAC GCGATGTCGC GAAAGTGCTG
CACCGCTATG TCGACGATCC CGCCGTCTTC CAGCAGCTGA TGTTGCGCAT CATCCTGAAT
CCGGAGGTGC TACGGCTGCA GCGCGACACG ATCGAGTTCG CGACCGGAGA GAAAGTGCCG
GCGCGCTATT CGACACGGGC GATGATCCGG CTGGAAGCGA CGATGGCGCG ACAGGCGATG
TGGCTGTCGG ACAAGGAAAC GCATGCCGTT TCCACGGTGG TGCTCGCAGC GACGTTTGGG
CGGCATGGGC GGCTGTCGGA GGAACAGAAA GCAGCCATCG AGTGCATCGC CGGTCCGGCC
CGCATCGCCG CGGTCGTCGG ACGCGCGGGT GCTGGTAAGA CCACGATGAT GAAGGCGGCG
CGGGAGGCGT GGGAGCTGGC CGGATATCGT GTCGTCGGTG GCGCGCTCGC CGGCAAAGCG
GCGGAAGGTC TGGAGAAGGA AGCCGGCATC GAGAGCCGCA CGCTCTCCTC CTGGGAGCTG
CGCTGGAACC GCGGTCGTGA CGTGCTCGAC AATAAAACCG TCTTCGTCAT GGACGAGGCC
GGCATGGTGG CCTCGAAACA GATGGCGGGC TTTGTCGATG CCGTCGTCAG GGCAGGGGCA
AAGATCGTGC TAGTCGGCGA TCCCGAGCAG CTTCAGCCGA TCGAAGCGGG GGCCGCTTTC
CGCGCCATTG TCGATCGGAT TGGTTACGCT GAACTCGAAA CGATCTATCG CCAGCGCGAG
GACTGGATGC GCAAGGCGTC GCTCGATCTG GCGCGCGGCA ATGTCGAGAA GGCGTTGGCG
CTCTACAATG CCAATGCGAG AATTGTTGGC GAACGTCTGA AGGCGGAAGC GGTTGAGCGC
CTGATCGCCG ACTGGAACCG TGGTTACGAT CAGACGAAGA CGACATTGAT CCTCGCCCAT
CTGCGCCGCG ACGTGCGCAT GCTCAACGTC ATGGCGCGCG AGAAGCTGGT CGAGCGCGGC
ATCGTCGGCG AGGGCCACGT CTTCAGAACG GCTGACGGCG AACGCCGTTA CGACGCAGGC
GATCAGATCG TCTTCCTGAA GAATGAGACC TCACTTGGGG TCAAGAACGG CATGATCGGC
CATGTCGTTG AGGCTGAGCC GAACCGCATC GTTGCGGTGG TCGGGGATCG GGATCATCGG
CGGCATGTTG TGGTCGAACA ACGCTTCTAC AGCAATCTCG ATCACGGCTA TGCGACGACC
ATCCACAAGT CTCAGGGCGC CACTGTCGAC AGGGTCAAGG TGCTGGCCTC TCTCTCGCTC
GATCGGCATC TGACCTATGT CGCGATGACC CGCCATCGCG AGGATCTTCA GCTCTATTAC
GGGCGCCGTT CCTTCGCCTT CAACGGTGGC CTAGCCAAGG TTCTTTCCCG AAAGAACGCC
AAGGAGACGA CGCTCGATTA CGAGCGCGGC AAACTCTACC GCGAGGCCCT CCGCTTTGCC
GAAAACCGTG GCCTGCACAT CATGCAGGTG GCTCGAACAA TGCTGCGCGA CCGGCTCGAC
TGGACGCTGC GCCAAAAAAC AAAGGTTTCC GATCTCGTTC ATAGGCTTCG TGCGCTCGGT
GAGCGCCTCG GCCTCGACCA ATCCCCAAAA ACCCAAACGA TGAAGGAGGC CGCGCCCATG
GTCGCAGGCA TCAAGACATT CTCCGGCTCT GTTGCCGATA CGGTCGGTGA CAAGCTCGGC
GCCGATCCCA CGCTGAAGCA GCAATGGGAG GAGGTGTCGG TGCGCTTCCG CTACGTCTTC
GCCGATCCCG AAACCGCCTT CCGCGCCATC AACTTCGATA CGGTTCTGGC AGATAAGGAG
GCAGCGAAAG CGGTCTTGCA GAAGCTTGAG GCGGAGCCGG CATCGATCGG GGCGCTGAAG
GGCAAGACCG GTATTCTGGC CAGCAAGACG GAGCGCGAGG CGCGCCGCGT CGCAGAGGTC
AATGTTCCCG CCCTGAAGCG CGATCTGGAG CAATATCTGC GGATGCGCGA GACCGCGACG
CTGCGGATAG TGACCGAAGA ACAAGCCCTG CGCCAGCGCG TCTCGGTCGA CATCCCGGCG
CTCTCGCCGG CCGCACGCGT GGTGCTTGAG CGCGTGCGCG ACGCGATCGA CCGGAACGAT
CTGCCGGCGG CCCTTGGATA TGCGCTCAGC AATCGCGAGA CCAAGCTCGA AATCGACGGG
TTCAACCAGG CTGTTACCGA ACGCTTCGGC GAGCGGACCC TGCTGAGCAA CGTGGCGCGT
GAGCCGTCCG GAAAGCTGTA CGAAAAGCTT GCCGAGGGGA TGAAGCCCGA GCAGAAAGAG
CAGTTGAAGC AAGCCTGGCC GATCATGCGC ACGGCCCAGC AGCTCGCCGC CCACGAACGC
ACCGTGCAGT CGCTGAAACA GGCCGAGGAA TTGCGGCAGA CGTTGCGCCA GGCACCGGTG
CTGAAACAAT GA
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| Protein sequence | MLRRPVWPGR SRRTRFEPGA FIAVAIAHFS ASIISRGDGR SVVLSAAYRH CAKMEYEREA
STIDYTRKQG LLHEEFMLPA DAPKWAKALI ADRSVSGAVE AFWNKVEAFE KRSDAQLARD
LTIALPLELT PEQNIALVRD FVEKHILGKG MVADWVYHDN PGNPHIHLMT TLRPLTEDGF
GAKKVAVIGE DGQLVRTKSG KILYELWAGS TDDFNALRDG WFERLNHHLA LGGIDLRIDG
RSYKKQAIEL EPTIHLGVGA KAIARKAEQQ GVRPELERIE LNEERRSENT RRILKNPAIV
LDLIMREKSV FDERDVAKVL HRYVDDPAVF QQLMLRIILN PEVLRLQRDT IEFATGEKVP
ARYSTRAMIR LEATMARQAM WLSDKETHAV STVVLAATFG RHGRLSEEQK AAIECIAGPA
RIAAVVGRAG AGKTTMMKAA REAWELAGYR VVGGALAGKA AEGLEKEAGI ESRTLSSWEL
RWNRGRDVLD NKTVFVMDEA GMVASKQMAG FVDAVVRAGA KIVLVGDPEQ LQPIEAGAAF
RAIVDRIGYA ELETIYRQRE DWMRKASLDL ARGNVEKALA LYNANARIVG ERLKAEAVER
LIADWNRGYD QTKTTLILAH LRRDVRMLNV MAREKLVERG IVGEGHVFRT ADGERRYDAG
DQIVFLKNET SLGVKNGMIG HVVEAEPNRI VAVVGDRDHR RHVVVEQRFY SNLDHGYATT
IHKSQGATVD RVKVLASLSL DRHLTYVAMT RHREDLQLYY GRRSFAFNGG LAKVLSRKNA
KETTLDYERG KLYREALRFA ENRGLHIMQV ARTMLRDRLD WTLRQKTKVS DLVHRLRALG
ERLGLDQSPK TQTMKEAAPM VAGIKTFSGS VADTVGDKLG ADPTLKQQWE EVSVRFRYVF
ADPETAFRAI NFDTVLADKE AAKAVLQKLE AEPASIGALK GKTGILASKT EREARRVAEV
NVPALKRDLE QYLRMRETAT LRIVTEEQAL RQRVSVDIPA LSPAARVVLE RVRDAIDRND
LPAALGYALS NRETKLEIDG FNQAVTERFG ERTLLSNVAR EPSGKLYEKL AEGMKPEQKE
QLKQAWPIMR TAQQLAAHER TVQSLKQAEE LRQTLRQAPV LKQ
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