| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9142 |
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| Symbol | dppD |
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| ID | 7367692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 105193 |
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| End bp | 106836 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643644337 |
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| Product | ABC transporter nucleotide binding/ATPase protein |
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| Protein accession | YP_002542634 |
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| Protein GI | 222083231 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.269566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGGTGCGGC TTCTTCATGG CGTGCGCGTG TCCTTGACGA TCGCAGTGAT CGCGACGCTG
ATTGCCGCTG CCATCGGGAC GGTGCTTGGA CTTCTTGCAG GCTATTACAA AGGGATTGCA
GCCGTTCTCG CATTGAGGGG ATCAGATGTC ATGCTCTGTT TCCCGCCCTT GCTGGTTGCC
CTGCTGGTCG TGACGATCGC GGGTCCGGGG CTCACGACAC TGATTGGGGT ACTTTCCGTT
GTTTTCGTAC CCACTTTCGT GCGGGTCGTT TACTCCGGCG TTCTTGGTAT CCGCGAACAG
GAATTCGTCG AAGCCATGCG GGCGCTCGGG GTGCGCAGCT CCTTTATCAT GTTCCGCACG
ATATTGCCGA ACATTATCGG GCCGCTTCTG GTCCAATGTA GCATCGCCAT GGCGACGGCT
GTTCTCATGG AATCAGGCCT CTCCTTTCTA GGTCTCGGTG TTCCGCCACC GGAATCATCG
CTCGGTCTCA TGGTCGCGTC CGCGCGTATG TCTATGTATC AGGCTCCGCA TCTCCTCATT
TGGCCAGCTG CGGCGCTTAC CTTCATCGTC CTCGTCATGA ATGCGCTTTG CGACGGTCTG
CGTGACCACT TCGACCCAAA GCCGAGACTC AGAGCCCGAG CGATAATCGA GCCGCGGTTG
TCACATGCGG CGGATGCGAA TCGCGACGCC TGTCTTTTAG TGAATGACCT GTCGGTCACG
ATTACCAACG ATAAAGCTCC CCTTTATGCG GTGCGCAATG TCTCTCTATC GATCTGTAGC
GGCGAAATCG TTGCGCTGGT CGGTGAGAGC GGATCCGGCA AATCGCTGCT CAGCCTGTCG
GTCATGGGCC TGCTTCCCGA GGGGGTTGCA GCGCGGTCGG GCAGTATCCA GATCGAGCGC
GAAGAAATCC TCGGGCTTAG CGAAGGCGAG CTCTTGAAGC GTCGCGGGCG CAAGCTCGCC
ATGATATTCC AGGATCCATC GAGCAGCCTC AACCCGGTCA AGAAGATCGG CTTCCAGCTG
GCGGAAGCAT TGCAAGCCCA TGCGAAGATG ACCCGCAAGC AGGTTTCGCA CGCCGTCGTC
GACCTCCTTT CATCTGTCGG GATCGCGGAT CCCGCCCGTC GCGCTCGTGT GTACCCGCAC
GAAATGTCCG GCGGAATGAA GCAGCGCGTC ATGATTGCGA TGGCGTTGGC CAACCAGCCT
AAGCTCTTGA TTGCGGACGA ACCGACAACG GCGCTCGATG TGACAATTCA AGCGCAGGTC
CTCGATCTCA TCCGCAAACG CCGGGATGAG GGTGATCTCG CGATCCTGTT TGTGACGCAT
AGCCTTGGTG TCGTCCGCGA AATTGCTGAC CGGGTGATGG TCATGTATGC CGGGGAAATT
CTGGAAGAAG GACCGGTCGG AGATGTCTTC CACAAACCCA AACACCCGTA CACCATGGCT
CTCCTAAAGA GCTATCCCAA GGAGTTCGGC CCCGCGCCCG TTGGTATTCC AGGCTCCGTT
CCGCCGCCGC ATCATCTACC ACCCGGTTGT TCGTTTGCCC CGAGATGTCC GCTTTGCCTT
CCCGACTGTG AAAGACAGCG ACCTTCCTTG GTCAGCATTG AAGTCGACCG CAAAACCCGG
TGTATTCGTT GGGAGGAACT ATGA
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| Protein sequence | MVRLLHGVRV SLTIAVIATL IAAAIGTVLG LLAGYYKGIA AVLALRGSDV MLCFPPLLVA
LLVVTIAGPG LTTLIGVLSV VFVPTFVRVV YSGVLGIREQ EFVEAMRALG VRSSFIMFRT
ILPNIIGPLL VQCSIAMATA VLMESGLSFL GLGVPPPESS LGLMVASARM SMYQAPHLLI
WPAAALTFIV LVMNALCDGL RDHFDPKPRL RARAIIEPRL SHAADANRDA CLLVNDLSVT
ITNDKAPLYA VRNVSLSICS GEIVALVGES GSGKSLLSLS VMGLLPEGVA ARSGSIQIER
EEILGLSEGE LLKRRGRKLA MIFQDPSSSL NPVKKIGFQL AEALQAHAKM TRKQVSHAVV
DLLSSVGIAD PARRARVYPH EMSGGMKQRV MIAMALANQP KLLIADEPTT ALDVTIQAQV
LDLIRKRRDE GDLAILFVTH SLGVVREIAD RVMVMYAGEI LEEGPVGDVF HKPKHPYTMA
LLKSYPKEFG PAPVGIPGSV PPPHHLPPGC SFAPRCPLCL PDCERQRPSL VSIEVDRKTR
CIRWEEL
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