Gene Avi_9076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9076 
SymbolmcpC 
ID7367804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011984 
Strand
Start bp50659 
End bp52497 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content59% 
IMG OID643644297 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_002542594 
Protein GI222083191 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACGCC CTAGTATCCT AGTCTCAGTA AGCCTCTCTC TTGTTACGAT CAGCATCGTC 
GTCTTGGGCC TGTACGCCTT CATGGTAACG GGCATGGATC GGCTCAACGC GCGCACGGCA
GACGTCGCCG ACGGTTGGCT CCCGCGCAGC AAACTGTCCG CGCAAGTCAA GATCGCCTTG
GACGATCTGC GGATTGTTTA CGGCCAGCAT GCGGTGGAAG CGAACGTCCA GCGAATGAAC
GAGCTGGCCA AGATATCTGC AACCCGGGAA GCCGACCTGC GTGATGCGCT GGAGGTCTAT
GAGAAGCGCA TCTCCTCAGA CGTTGAGCGC GCGGCGTTTG CGCCGATCCC TCCACTCGTG
GACAGTTTCG TTCAGAAAGG CGGCTACATG CTGGAGATGT CCTCCGGCAA GTCTAAAGAC
CTTGCCGGAT ACCTTTTCGG CCACGGCATG ACGACCTTGG CAAAAGACAT CAACGCGTCG
CTCGACAAAC TGATCGCATT CAGCGAGGAG GGTGCCCACG CTTCGAAGAC AGACGGCGTC
AAGACGTTCA GATCAGTGCA GTTCGGAAGT CTGCTCGCAC TTGGTATCGC GCTGACGATC
CTGGCCGGTG TGACCGCATA TGTTATCCGC GGCGTCGCGC GGCCAGTGAA ACTCATCACG
GGCTCAATGT CCCGTCTCGC TGGAGGGAAT ACTCAGGCAA GCGTGCCTTT CGCCGATCGG
TCCGACGAAA TCGGCTTGAT GGCCGCCGCG GTCGAGGTGT TCCGCAAGGA GGCGATCGAG
AAGACGGCGC TGGAAATCCA AGCGGATCGA GACCGCAAAC ATGCGGAAGC TTCACGCGAA
AGGCTTACTC ACGAGGCTGA AGCCGCCGCG ATGGCGCGGC TTCAGCAAGC GATCTCCGGC
ATCGCCGATG GTCTCCACGC AATATCGCAC GGCAATCTGC AGATGAGGCT GGGCAAGCCG
CTGTCGCCGG AATTCGACAA GCTACGGCTC GACCTTAATA CGGCAGCCGA GCAGCTTTCG
GCCACGCTGA ATACGGTGAA CTCCGCGGCG CATTCCATTT TGAGCCGTTC GACCGAGATC
GCAGACAGCA CTGCGGCCCT GTCGAACCGT ACCGAAGAGC AGGCCGCGGC GCTTGTCAAG
ACGACTGCCT CTATCAATCA GATCGCTTCT ACCATGGGGC ATTCAGTCAA GCGACTCGAC
GACGCACGCC TGGTCGCCAG AACCGCCAAC GAAAGCGCGA CGAAATCGGG CTGCATCGTG
GCTGAGACCA TTCAAGCGAT GGAGAAGATC GAACACTCCT CTGGCCAGAT TTCGAGCATC
ACGCAGGTCA TCAACGAAAT CGCGTTTCAA ACGAGCCTTC TGGCACTCAA CGCGGGTGTC
GAAGCCGCTA GAGCGGGAGA GGCTGGAAAG GGCTTCGCCG TCGTCGCCCA GGAAGTTCGC
GCGCTCGCCA CGCGATCGGC CGAGGCCGCG AAGGAAATCA ACGGACTCAT CGAGACGTCG
AGCACCCAGG TCAAAGCGGG CGTCGAACTC GTCCACAAGA CCGGAGCAAC CTTGGGGACG
ATCGTATCCC ATATCTCTTC CATGAAAGAA AGCATGGAGG GTATCGCATC TGCGACAGTT
GAACAGGCGA CGACTCTTTC AGAGGTCACG CATGCGATCA ACCAACTGGA CAAATTCACG
CAGCAAAACA CGGCCATGGT CGAGGAAACC TCAGCCGCGA GCTTCGAGCT GGCAGCGGAA
GCGAGAATAC TGCAAGACCT AATGGCCGCC TTCGAGCTTC CGGATACATC CATGGCCGAC
AGGCCTTTCC AACAGCCGGC GCGGCAACGC GCAGCCTAA
 
Protein sequence
MRRPSILVSV SLSLVTISIV VLGLYAFMVT GMDRLNARTA DVADGWLPRS KLSAQVKIAL 
DDLRIVYGQH AVEANVQRMN ELAKISATRE ADLRDALEVY EKRISSDVER AAFAPIPPLV
DSFVQKGGYM LEMSSGKSKD LAGYLFGHGM TTLAKDINAS LDKLIAFSEE GAHASKTDGV
KTFRSVQFGS LLALGIALTI LAGVTAYVIR GVARPVKLIT GSMSRLAGGN TQASVPFADR
SDEIGLMAAA VEVFRKEAIE KTALEIQADR DRKHAEASRE RLTHEAEAAA MARLQQAISG
IADGLHAISH GNLQMRLGKP LSPEFDKLRL DLNTAAEQLS ATLNTVNSAA HSILSRSTEI
ADSTAALSNR TEEQAAALVK TTASINQIAS TMGHSVKRLD DARLVARTAN ESATKSGCIV
AETIQAMEKI EHSSGQISSI TQVINEIAFQ TSLLALNAGV EAARAGEAGK GFAVVAQEVR
ALATRSAEAA KEINGLIETS STQVKAGVEL VHKTGATLGT IVSHISSMKE SMEGIASATV
EQATTLSEVT HAINQLDKFT QQNTAMVEET SAASFELAAE ARILQDLMAA FELPDTSMAD
RPFQQPARQR AA