Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9076 |
Symbol | mcpC |
ID | 7367804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011984 |
Strand | + |
Start bp | 50659 |
End bp | 52497 |
Gene Length | 1839 bp |
Protein Length | 612 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643644297 |
Product | methyl-accepting chemotaxis protein |
Protein accession | YP_002542594 |
Protein GI | 222083191 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACGCC CTAGTATCCT AGTCTCAGTA AGCCTCTCTC TTGTTACGAT CAGCATCGTC GTCTTGGGCC TGTACGCCTT CATGGTAACG GGCATGGATC GGCTCAACGC GCGCACGGCA GACGTCGCCG ACGGTTGGCT CCCGCGCAGC AAACTGTCCG CGCAAGTCAA GATCGCCTTG GACGATCTGC GGATTGTTTA CGGCCAGCAT GCGGTGGAAG CGAACGTCCA GCGAATGAAC GAGCTGGCCA AGATATCTGC AACCCGGGAA GCCGACCTGC GTGATGCGCT GGAGGTCTAT GAGAAGCGCA TCTCCTCAGA CGTTGAGCGC GCGGCGTTTG CGCCGATCCC TCCACTCGTG GACAGTTTCG TTCAGAAAGG CGGCTACATG CTGGAGATGT CCTCCGGCAA GTCTAAAGAC CTTGCCGGAT ACCTTTTCGG CCACGGCATG ACGACCTTGG CAAAAGACAT CAACGCGTCG CTCGACAAAC TGATCGCATT CAGCGAGGAG GGTGCCCACG CTTCGAAGAC AGACGGCGTC AAGACGTTCA GATCAGTGCA GTTCGGAAGT CTGCTCGCAC TTGGTATCGC GCTGACGATC CTGGCCGGTG TGACCGCATA TGTTATCCGC GGCGTCGCGC GGCCAGTGAA ACTCATCACG GGCTCAATGT CCCGTCTCGC TGGAGGGAAT ACTCAGGCAA GCGTGCCTTT CGCCGATCGG TCCGACGAAA TCGGCTTGAT GGCCGCCGCG GTCGAGGTGT TCCGCAAGGA GGCGATCGAG AAGACGGCGC TGGAAATCCA AGCGGATCGA GACCGCAAAC ATGCGGAAGC TTCACGCGAA AGGCTTACTC ACGAGGCTGA AGCCGCCGCG ATGGCGCGGC TTCAGCAAGC GATCTCCGGC ATCGCCGATG GTCTCCACGC AATATCGCAC GGCAATCTGC AGATGAGGCT GGGCAAGCCG CTGTCGCCGG AATTCGACAA GCTACGGCTC GACCTTAATA CGGCAGCCGA GCAGCTTTCG GCCACGCTGA ATACGGTGAA CTCCGCGGCG CATTCCATTT TGAGCCGTTC GACCGAGATC GCAGACAGCA CTGCGGCCCT GTCGAACCGT ACCGAAGAGC AGGCCGCGGC GCTTGTCAAG ACGACTGCCT CTATCAATCA GATCGCTTCT ACCATGGGGC ATTCAGTCAA GCGACTCGAC GACGCACGCC TGGTCGCCAG AACCGCCAAC GAAAGCGCGA CGAAATCGGG CTGCATCGTG GCTGAGACCA TTCAAGCGAT GGAGAAGATC GAACACTCCT CTGGCCAGAT TTCGAGCATC ACGCAGGTCA TCAACGAAAT CGCGTTTCAA ACGAGCCTTC TGGCACTCAA CGCGGGTGTC GAAGCCGCTA GAGCGGGAGA GGCTGGAAAG GGCTTCGCCG TCGTCGCCCA GGAAGTTCGC GCGCTCGCCA CGCGATCGGC CGAGGCCGCG AAGGAAATCA ACGGACTCAT CGAGACGTCG AGCACCCAGG TCAAAGCGGG CGTCGAACTC GTCCACAAGA CCGGAGCAAC CTTGGGGACG ATCGTATCCC ATATCTCTTC CATGAAAGAA AGCATGGAGG GTATCGCATC TGCGACAGTT GAACAGGCGA CGACTCTTTC AGAGGTCACG CATGCGATCA ACCAACTGGA CAAATTCACG CAGCAAAACA CGGCCATGGT CGAGGAAACC TCAGCCGCGA GCTTCGAGCT GGCAGCGGAA GCGAGAATAC TGCAAGACCT AATGGCCGCC TTCGAGCTTC CGGATACATC CATGGCCGAC AGGCCTTTCC AACAGCCGGC GCGGCAACGC GCAGCCTAA
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Protein sequence | MRRPSILVSV SLSLVTISIV VLGLYAFMVT GMDRLNARTA DVADGWLPRS KLSAQVKIAL DDLRIVYGQH AVEANVQRMN ELAKISATRE ADLRDALEVY EKRISSDVER AAFAPIPPLV DSFVQKGGYM LEMSSGKSKD LAGYLFGHGM TTLAKDINAS LDKLIAFSEE GAHASKTDGV KTFRSVQFGS LLALGIALTI LAGVTAYVIR GVARPVKLIT GSMSRLAGGN TQASVPFADR SDEIGLMAAA VEVFRKEAIE KTALEIQADR DRKHAEASRE RLTHEAEAAA MARLQQAISG IADGLHAISH GNLQMRLGKP LSPEFDKLRL DLNTAAEQLS ATLNTVNSAA HSILSRSTEI ADSTAALSNR TEEQAAALVK TTASINQIAS TMGHSVKRLD DARLVARTAN ESATKSGCIV AETIQAMEKI EHSSGQISSI TQVINEIAFQ TSLLALNAGV EAARAGEAGK GFAVVAQEVR ALATRSAEAA KEINGLIETS STQVKAGVEL VHKTGATLGT IVSHISSMKE SMEGIASATV EQATTLSEVT HAINQLDKFT QQNTAMVEET SAASFELAAE ARILQDLMAA FELPDTSMAD RPFQQPARQR AA
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