Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9052 |
Symbol | |
ID | 7367786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011984 |
Strand | + |
Start bp | 33087 |
End bp | 34187 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643644280 |
Product | polyhydroxybutyrate depolymerase |
Protein accession | YP_002542577 |
Protein GI | 222083174 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
TIGRFAM ID | [TIGR01840] esterase, PHB depolymerase family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACGTTAC CCTCCAATTC ACGGCAACTG ATCGAAGTGA AAAACTTCGG AGCGAACCCC GGTAAGCTGA AGTGCTGGCT TTATCTGCCG ACCATCCTGG CTCCGAAAAC ACCGCTCGTC GTCGTCCTAC ACGGGTGCAC GCAGAACGCT GCAGCTTATG ATCATGGCTC CGGTTGGTCG AAGCTGTCGG AAGAGAAGGG ATTCGCGGTC CTGTTTCCGG AGCAGCAGCG CGCCAATAAC GCCAATCTGT GTTTCAACTG GTTCGAGCCG GGCGACACCC GGCGTGATCA GGGCGAAGCT CTTGCGATCC GGGAGATGAT CGGGCACGTC ATCGAGTCGC AGGGGATAGA TCCTGAACGT GTCTTCATCA CGGGACTGTC GGCCGGAGGC GCGATGGCGA ACGTCATGCT GGCGACCTAT CCCGAATTGT TTGCCGGCGG CGCGATCATT GGCGGGCTTC CTTACGGAAC GGCCTCAGGA GTGGGTCAGG CTTTCGAACG GATGCGGGGC CATAACCCGC CGAGCGAAAG TCAGCTTCAA TCGGCCCTGA TGTCCGCAGC TTCCAGCTGG GGTTCATGGC CGCCGATTTC TGTCTGGCAC GGGACGCACG ACCAGACGGT CAAGCCGATC AATGCCGAGC AGATTGCCCA TCAATGGGGC GGCATGCATC AGATCTCCGC GACACCGGAC TTGATCGAGT CCGTCAATGG CCACAGCCGT AAGGCCTGGC TCGATGAAAG CGGCAAAGCG GTCATGGAGG TTTATCTCAT CAAGGGAATG GCGCACGGTG TTCCCCTGTC GTTCGCAGCC AAAGCCCCGT TGGGGCACTC CGGACCGTTC ATGCTGGAGG CCGGAATTTC TTCGACGACG CGCATTGCCA GGACATGGGG CCTTGCCGAC GATGCCGATG TCGCCGCAAC CGAGGCGGTA TTCAACCCTG ACTTGAAGCA CGACGCGGTT CCCTCAGGCA TTGAAAATGT TATCGCCAAG GCAATGGCAT ATGCAAAACC AGGCGCTGTG AATAACGTCG GCGATCGACA TGATCACGGC GTCGGCAAGG TTATCAACGA CGCGCTTCGC GCCGCAGGGC TAATTCGATA A
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Protein sequence | MTLPSNSRQL IEVKNFGANP GKLKCWLYLP TILAPKTPLV VVLHGCTQNA AAYDHGSGWS KLSEEKGFAV LFPEQQRANN ANLCFNWFEP GDTRRDQGEA LAIREMIGHV IESQGIDPER VFITGLSAGG AMANVMLATY PELFAGGAII GGLPYGTASG VGQAFERMRG HNPPSESQLQ SALMSAASSW GSWPPISVWH GTHDQTVKPI NAEQIAHQWG GMHQISATPD LIESVNGHSR KAWLDESGKA VMEVYLIKGM AHGVPLSFAA KAPLGHSGPF MLEAGISSTT RIARTWGLAD DADVAATEAV FNPDLKHDAV PSGIENVIAK AMAYAKPGAV NNVGDRHDHG VGKVINDALR AAGLIR
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