Gene Avi_9042 details

Gene Information

• Locus tag: Avi_9042
• ID: 7367780
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011984
• Strand: -
• Start bp: 28639
• End bp: 29355
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643644274
• Product: transposase
• Protein accession: YP_002542571
• Protein GI: 222083168
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3316] Transposase and inactivated derivatives

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.276584
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAGAT TTGCCCGTGA TCCTCTTTAT CGTCGCCATC GATTTCCAGC CGAGGTGATT 
GCCCATGCCG TTTGGCTCTA TTTCCGGTTT CCGCTGAGCC TGCGGATGGT CGAGGATATG 
CTGGCTGCCC GTGGCCTCAT CGTCTCTCAC CAAACCGTGA GGCTCTGGGC GGAGAAGTTC 
GGCCGGCATT TCGCCAATGA CATTCGGAGG CGCTCAGCCG GCAGGCTCGG TGACAAATGG 
CACTTCGACG AGGTTGTCAT CACGATCGCC GGCAAGAAAC ATTGGCTCTG GCGCGCCGTC 
GATCAGGACG GTTTTGTTCT CGACGTGCTG GTGCAAAGCC GCCGCGATGC CAAGGCGGCA 
AAGCGTTTGA TGCGAAAGCT TCTGAAAGGG CAATGCCGTG CGCCGCGTGT GATAATCACC 
GACAAGCTTC GATCCTACGG TGCGGCGAAG CGTGATATCA TGCCCGGTAT CGAACATCGC 
TCGCACAAGG GCCTGAACAA TCGGGCCGAG AATTCTCATC AGCCTGTCCG ACGGCGTGAA 
AGGATTATGA GGCGCTTCAA GTCAGCGAGG CACCTTCAAC GGTTCGTTTC CATCCGCGAT 
CCGATTGCCA ACCTCTTTCA CGTTCCCCGC CACGACATTC CATCCACCCA TCATCGCGAA 
TTGCGAGAAA CAGCCATGCA AACATGGTAC CAAATCGCTG GCATTCAAGC CGCCTAA 

 

Protein sequence

MTRFARDPLY RRHRFPAEVI AHAVWLYFRF PLSLRMVEDM LAARGLIVSH QTVRLWAEKF 
GRHFANDIRR RSAGRLGDKW HFDEVVITIA GKKHWLWRAV DQDGFVLDVL VQSRRDAKAA 
KRLMRKLLKG QCRAPRVIIT DKLRSYGAAK RDIMPGIEHR SHKGLNNRAE NSHQPVRRRE 
RIMRRFKSAR HLQRFVSIRD PIANLFHVPR HDIPSTHHRE LRETAMQTWY QIAGIQAA