Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8334 |
Symbol | trbB |
ID | 7365282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 256903 |
End bp | 257874 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643641887 |
Product | conjugal transfer protein TrbB |
Protein accession | YP_002540184 |
Protein GI | 222080320 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.222514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGACCCAGC TTCGCTCCCA TCCGCGCCTT GTCCGCAAAC TCCAGGACGC ACTCGGCGAC CAGCTCTGCG TCGCCCTTGA TGACGCGACG GTCGTCGAGA TCATGCTCAA TCCCGATGGT CGGCTGTTTA TCGAGCGGCT CGGTCATGGC GTAGCACGAG CCGGCGCAAT GACGCCTTCC GCCGCCGAAG TCGTGATCGG CAGCGTCGCC CACGCCCTGC AGTCAGAGGC TGACGATGAG CGGCCGATCA TATCCGGCGA ATTGCCGATC GGCGGCCACC GTTTCGAGGG CCTGTTGCCA CCGATCGTGT CCGGGCCGGC ATTTACGATC CGGCGGCGGG CGTCGCGCCT CATACCGCTC GACGATTATG TAAAGTCGAA AGTGATGACC GAAGCCCAGG CGTCTGCCAT CCGCAGCGCT ATCGATTCCC GTATGAACAT CGTCATTTCG GGCGGAACTG GTTCGGGCAA GACGACGCTT GCCAATGCCA TCATCGCCGA GATCGTCGCG GCCGCTCCGG ACGATCGCAT GGTCATTCTC GAAGACACCG CCGAAATCCA ATGCGCCGCC GAGAACGCTG TCTCACTGCA TACCAGCGAT ACGGTCGACA TGGCCCGCCT CCTCAAAAGC ACGATGCGCC TGCGTCCCGA CCGCATCATT GTCGGCGAGG TTCGGGACGG CGCCGCACTG ACCCTGCTGA AAGCCTGGAA CACCGGCCAT CCCGGCGGTG TCACCACAAT CCATTCCAAC ACCGCGATGT CGGCACTGCG CAGGCTGGAA CAGCTGACGG CCGAAGCAAG TCAGCAACCG ATGCAGGAGG TGATCGGCGA AGCCGTCGAT CTTGTCGTCT CCATCGAACG CTCGGGAAAG GGGAGGCGGG TCCGCGAGGT CATTCATATC GAAGGATACC GCAACAGCCA TTACCAGACC GAACATTACG CCCAGATCGA CGAGGACAGC CATGTCGCGT AA
|
Protein sequence | MTQLRSHPRL VRKLQDALGD QLCVALDDAT VVEIMLNPDG RLFIERLGHG VARAGAMTPS AAEVVIGSVA HALQSEADDE RPIISGELPI GGHRFEGLLP PIVSGPAFTI RRRASRLIPL DDYVKSKVMT EAQASAIRSA IDSRMNIVIS GGTGSGKTTL ANAIIAEIVA AAPDDRMVIL EDTAEIQCAA ENAVSLHTSD TVDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKAWNTGH PGGVTTIHSN TAMSALRRLE QLTAEASQQP MQEVIGEAVD LVVSIERSGK GRRVREVIHI EGYRNSHYQT EHYAQIDEDS HVA
|
| |