Gene Avi_8334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8334 
SymboltrbB 
ID7365282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp256903 
End bp257874 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content62% 
IMG OID643641887 
Productconjugal transfer protein TrbB 
Protein accessionYP_002540184 
Protein GI222080320 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID[TIGR02782] P-type conjugative transfer ATPase TrbB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.222514 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCCAGC TTCGCTCCCA TCCGCGCCTT GTCCGCAAAC TCCAGGACGC ACTCGGCGAC 
CAGCTCTGCG TCGCCCTTGA TGACGCGACG GTCGTCGAGA TCATGCTCAA TCCCGATGGT
CGGCTGTTTA TCGAGCGGCT CGGTCATGGC GTAGCACGAG CCGGCGCAAT GACGCCTTCC
GCCGCCGAAG TCGTGATCGG CAGCGTCGCC CACGCCCTGC AGTCAGAGGC TGACGATGAG
CGGCCGATCA TATCCGGCGA ATTGCCGATC GGCGGCCACC GTTTCGAGGG CCTGTTGCCA
CCGATCGTGT CCGGGCCGGC ATTTACGATC CGGCGGCGGG CGTCGCGCCT CATACCGCTC
GACGATTATG TAAAGTCGAA AGTGATGACC GAAGCCCAGG CGTCTGCCAT CCGCAGCGCT
ATCGATTCCC GTATGAACAT CGTCATTTCG GGCGGAACTG GTTCGGGCAA GACGACGCTT
GCCAATGCCA TCATCGCCGA GATCGTCGCG GCCGCTCCGG ACGATCGCAT GGTCATTCTC
GAAGACACCG CCGAAATCCA ATGCGCCGCC GAGAACGCTG TCTCACTGCA TACCAGCGAT
ACGGTCGACA TGGCCCGCCT CCTCAAAAGC ACGATGCGCC TGCGTCCCGA CCGCATCATT
GTCGGCGAGG TTCGGGACGG CGCCGCACTG ACCCTGCTGA AAGCCTGGAA CACCGGCCAT
CCCGGCGGTG TCACCACAAT CCATTCCAAC ACCGCGATGT CGGCACTGCG CAGGCTGGAA
CAGCTGACGG CCGAAGCAAG TCAGCAACCG ATGCAGGAGG TGATCGGCGA AGCCGTCGAT
CTTGTCGTCT CCATCGAACG CTCGGGAAAG GGGAGGCGGG TCCGCGAGGT CATTCATATC
GAAGGATACC GCAACAGCCA TTACCAGACC GAACATTACG CCCAGATCGA CGAGGACAGC
CATGTCGCGT AA
 
Protein sequence
MTQLRSHPRL VRKLQDALGD QLCVALDDAT VVEIMLNPDG RLFIERLGHG VARAGAMTPS 
AAEVVIGSVA HALQSEADDE RPIISGELPI GGHRFEGLLP PIVSGPAFTI RRRASRLIPL
DDYVKSKVMT EAQASAIRSA IDSRMNIVIS GGTGSGKTTL ANAIIAEIVA AAPDDRMVIL
EDTAEIQCAA ENAVSLHTSD TVDMARLLKS TMRLRPDRII VGEVRDGAAL TLLKAWNTGH
PGGVTTIHSN TAMSALRRLE QLTAEASQQP MQEVIGEAVD LVVSIERSGK GRRVREVIHI
EGYRNSHYQT EHYAQIDEDS HVA