Gene Avi_8326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8326 
SymboltrbF 
ID7365275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand- 
Start bp250884 
End bp251546 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content60% 
IMG OID643641880 
Productconjugal transfer protein TrbF 
Protein accessionYP_002540177 
Protein GI222080313 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.029334 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGGAC CCACTCCACC AGACAACCCC TATATCGCTG CGCGCAACGA ATGGAACGAA 
CGCTACGGCT CATACGTGAA AGCGGCCGCC GCCTGGCGCA TTGTCGGCAT CACCGGCATG 
ACAATGGCGG TGATCGGTTT CGGCTATGCG CTCTACCAGA GCACGCAGGT GAAGCTGATC 
CCCTATATCG TCGAGGTCGA CAAGCTCGGC ACGGCCGTCA ATGCCGGCTT TCCGCAGCAG 
ATCGAATATG CCGATCCGCG CGTGGTGCGT GCTACGCTCG GCAGTTTCGT CTCGAACTTC 
CGCTCCGTCA CGCCCGACGC CGTCGTCCAG AAACAATACA TCGACCGGAC CTACGGGCTG 
CTGCGGACAT CCGATCCGGC GACCGAAAAG GTCAATGCCT GGTTTCGCTC GAATTCGCCG 
TTCGAAAAGG CGAAGACAGC GACCGTGGCC ATCGAGGTCA ACAACATCGT CGCGCTATCG 
AACCAGAGTT ATCAGGTCGA CTGGACCGAA TTCGAGCGCG ATCGGCGAGG CAAGGAAACG 
GCGACACGCC GCTTCCGCGG CATTGCCACT GTGACGCTGA CGCCACCCCA GGACGAAGGC 
GTCATCCGTC TTAATCCAAT CGGTCTCTAT CTCCGCGACT TCGACTGGAC TGCACAGCTT 
TGA
 
Protein sequence
MAGPTPPDNP YIAARNEWNE RYGSYVKAAA AWRIVGITGM TMAVIGFGYA LYQSTQVKLI 
PYIVEVDKLG TAVNAGFPQQ IEYADPRVVR ATLGSFVSNF RSVTPDAVVQ KQYIDRTYGL 
LRTSDPATEK VNAWFRSNSP FEKAKTATVA IEVNNIVALS NQSYQVDWTE FERDRRGKET 
ATRRFRGIAT VTLTPPQDEG VIRLNPIGLY LRDFDWTAQL