| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8322 |
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| Symbol | nocR |
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| ID | 7365271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 247266 |
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| End bp | 248156 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641876 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002540173 |
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| Protein GI | 222080309 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.489992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCAGTC AGCGCGCTCT GGAAGCGTTC CGTGCCGTGA TGACCACAGG CACCGTTTCG
GCCGCAGCGG AGGAGCTCAA CGTATCCCAG CCGGCCGTCA GCCGCCTAGT CAGGGACCTC
GAAGAATACA CGCAACTGCG CTTGTTTAGC CGACATGGCG GGCGCATCGT CGCGACGCGC
GAAGCCCATG AGTTTAATGC TGAAATCGAA CGCAGCTTCC TCGGTTTGCG CGTGATCGAG
CAGGCCGCTC GAGAAATCCG ACAAGGACGA CGCGGAACGG TTTCGGTTGC GGTGATGCCG
GCATTGGCGC AGACAATCCT GCCGGACGTG ATGGCGGATG TTCGTGTATC TCACCCAGAC
TTTCGTCTTG AACTTCTTGC GATGCCGACC CAAAGCATCG TCCGTCAGGT CGCTACACGA
CAATGTCCTC TCGGGTTGAC CTCACCAACC CATCACGCCA ATGAAGTTGA CGTGGTTAAA
TCGGGGTCAC TTCCGTATAG ATGTGTCATG CCTGACGGGC ATCCTCTAGC GGCCTACGAG
ATAATAAGGC TCCAGGACCT TTCTGGCATG GAGTTCATCA ATTATACCGA TGCTACGGCA
ACTGGCCGGA TGCTTGATCA CCGTTTCGCG CACATGACGA CGCCTCCAGT CGTAAATGCG
CGAGCGCCTA TTTCACCGGT TATTGCTGCA CTGGTTAGAA AAGGTCTCGG GGTGGCGATC
CTCGACCCAT TCACAGCACA GGATCACGTC AATCGTGGCG GCGTATCCCG CCCTGTACAA
ATTGATGAAG AGTTCCACTG GTCCTTCATC AAGCCTTACG GCGAAAAATT AAGTAGCGAC
CTGATGGCAG TGATTTCGAT CTTTGAAGAT CTTTCCAAGA ACTACGCCTA A
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| Protein sequence | MISQRALEAF RAVMTTGTVS AAAEELNVSQ PAVSRLVRDL EEYTQLRLFS RHGGRIVATR
EAHEFNAEIE RSFLGLRVIE QAAREIRQGR RGTVSVAVMP ALAQTILPDV MADVRVSHPD
FRLELLAMPT QSIVRQVATR QCPLGLTSPT HHANEVDVVK SGSLPYRCVM PDGHPLAAYE
IIRLQDLSGM EFINYTDATA TGRMLDHRFA HMTTPPVVNA RAPISPVIAA LVRKGLGVAI
LDPFTAQDHV NRGGVSRPVQ IDEEFHWSFI KPYGEKLSSD LMAVISIFED LSKNYA
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