Gene Avi_8316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8316 
SymbolnoxA 
ID7365266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp240275 
End bp241684 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content58% 
IMG OID643641871 
ProductD-nopaline dehydrogenase 
Protein accessionYP_002540168 
Protein GI222080304 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0492] Thioredoxin reductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATACAAA GTTACGACCT GGCCATCATT GGTGCGGGCC CGGCAGGTAT GGCTGCCGCG 
ATCGAGGCGG ACGCGGCCGG ATTGACCGTT GCCCTTATTG ACGAGCAGCC GGCGCCAGGC
GGGCAGATCT ATCGTTCTGT CGAAGCCGCG GACCACCAAC GCCTCGCTGT TCTTGGCAAA
GACTACGCAG CTGGACTTGA TCTCGTCGCA GCCTTTCGTG CCAGCGGCAT AACCTATATT
CCTTCAGGTA CTGTCTGGAA CATCGAGGAC AGTTATACGA TAGATTACGC AAGGGCAGGC
ACGTCGGACC GGATCTCAGC GAAATCCGTA CTCGTCGCAA GCGGTGCCGT AGAGCGAGCA
ATGCCACTTC CAGGTTGGAC CTTGCCAGGC GTTACAACGG CAGGCGCCCT CCAGATTCTG
CTAAAGGCGC ACGGTGCCAT CAACGACGAT GTCGTACTGG CTGGGTCGGG GCCGCTTATC
TATCTTATTG CGTTTCAGAT GATAAAAGCG GGCGCCCCAC CAAGGGCGAT CGTCGATATG
GGGCAGTCGA TGCCCGTCCG GGCCGTGCTC AATCATCTAC CGGGCGCACT CAAGGGCTGG
CGTTACCTTG CGAAGGGGCT CCGCCTTCTT CGCGACATCA AGAAAGCAGA CATACCGTTC
TATCACAAAG CCAGCAATGT GCGCATCGAG GGCGAAGGAT CGGTGCAAGG TATCTCCTTC
GATCATCGTG GCCGACCGAT TCATCTCGCC ACTTCATCGG TTGCCCTCCA TCAGGGCGTT
GTCCCAAATC AGCAGATCAC CCGACTATTG CGTTGCAAAC ACGAATGGAA CGGCGATCAA
CGCTGCTTCG TGCCAGTTCT TGATCACTTC GGCGAAAGCA GCGTTCCTGG TGTTTTTGTA
GCCGGCGACG GCGCGGGGAT CGCCGGCGCG GTGTCAGCGG CGCTTCGCGG ACGTATCGCG
GCTTTGAAGG TCGCGGAACG ATCGGGGCGC GGGAACGGCG AGCGGTTGAC GCAACTGATC
GCGGAACTCG GCAAGGACAG TGCGGTAAGA CCTCTCCTTG AAAGCCTCTA TGCCCCTTCC
GAGGAAGTCT TGTTCCCCGA TGACAAGACG ATCGTCTGTC GCTGCGAAGA GGTGACCGCT
GGCGATATCC GTCGCAACAT TGCGCTCGGC GTACAAGGAC CCAATCAGCT CAAATCATTT
CTTCGGTGTG GCATGGGGCC ATGCCAAGGT CGAGTTTGTG GTCTGCCCGT CACCGAAATC
ATTGCGCGTG AGCGAGGCGA GACCCCGCAA ACCATCGACT ATTACCGCAT TCGACCGCCA
TTGAAACCGC TTGTTCTTTC GGAACTTGCC GCGGTTCATG GCGAAGGAGC AATGAGCAAC
ACAAAGAAGG AGACTGAGGT CCATGATTAA
 
Protein sequence
MIQSYDLAII GAGPAGMAAA IEADAAGLTV ALIDEQPAPG GQIYRSVEAA DHQRLAVLGK 
DYAAGLDLVA AFRASGITYI PSGTVWNIED SYTIDYARAG TSDRISAKSV LVASGAVERA
MPLPGWTLPG VTTAGALQIL LKAHGAINDD VVLAGSGPLI YLIAFQMIKA GAPPRAIVDM
GQSMPVRAVL NHLPGALKGW RYLAKGLRLL RDIKKADIPF YHKASNVRIE GEGSVQGISF
DHRGRPIHLA TSSVALHQGV VPNQQITRLL RCKHEWNGDQ RCFVPVLDHF GESSVPGVFV
AGDGAGIAGA VSAALRGRIA ALKVAERSGR GNGERLTQLI AELGKDSAVR PLLESLYAPS
EEVLFPDDKT IVCRCEEVTA GDIRRNIALG VQGPNQLKSF LRCGMGPCQG RVCGLPVTEI
IARERGETPQ TIDYYRIRPP LKPLVLSELA AVHGEGAMSN TKKETEVHD