| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8309 |
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| Symbol | nocR |
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| ID | 7365260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 232967 |
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| End bp | 233869 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641865 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002540162 |
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| Protein GI | 222080298 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAACT TTGGACGCCA GATCGAGGCC TTTCGCGCCG TCATGTTAAC CGGTGGTATG
ACGACCGCCG CTGAGACCTT GCGGATTACC CAACCAGCAA TTAGCCGCCT GATCCGCGAC
CTCGAGGACG ATCTGAAAAT CGCGTTGTTT CATAGGAGGG GGAACCAAAT CACTCCGACG
GTCGAAGCAA CCGCATTTTT GGCCGAAGTC GAACGATCGT ACCTTGGTAT GGACCAGTTG
CGCACCTTCG CGGTTGACCT GCGCAATTCC CTGACAGGAT CGTTGCGGAT CGCTGCACTT
CCTGCGATGG CTCTCGGGTT CATGCCATAT TGTTTGGCAA AGTTTAGCGG AACTCGCCCC
AAGCTTTCAA TCACACTCGA TGGTATCCCA TCGCACCTCG TTCTGGAGCG GGTGGCTGGA
GGGCAATTCG AGCTGGGATT TGCAGCGGTC CCGGCGGACC GCCCGATGCT CAACACGACA
CCGATCAAGG CACGCGCAGT CGTGGTGATG CCGGAGGGGC ACCCGCTGGC CAAAAATGAG
ACGGTATCGG CAGATCAGTT GCGAAACGAA CGCATCGTGA TGCTGGACCG CGGGAACTAC
CTTCGCCACA CCATCGAGCG GGCGTTGGGA ACGCGCGCCG GTAGCCCTGG CGCTATCGAA
ACGCCCCTCT CCGCCATCGC CTGCTCTTTC GTTGCCAGAG GCTTAGGGGT GACGATCATT
GACGCTTTCA CGGCAATCAA TTTTCTCGGC CGCGGGATTG AAGCACGTCT GCTGGTTCCC
GAGCTCGATT TTGGATTCGC CATGGTAACT GCTCAGCAAC GACCGATGTC ACAGCTTGCT
AGGCAATTTG CGCAGGAGAT ACACCTCCTG GCGGAAGAGT ATCAGTCGCC GATCTTTGGG
TGA
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| Protein sequence | MSNFGRQIEA FRAVMLTGGM TTAAETLRIT QPAISRLIRD LEDDLKIALF HRRGNQITPT
VEATAFLAEV ERSYLGMDQL RTFAVDLRNS LTGSLRIAAL PAMALGFMPY CLAKFSGTRP
KLSITLDGIP SHLVLERVAG GQFELGFAAV PADRPMLNTT PIKARAVVVM PEGHPLAKNE
TVSADQLRNE RIVMLDRGNY LRHTIERALG TRAGSPGAIE TPLSAIACSF VARGLGVTII
DAFTAINFLG RGIEARLLVP ELDFGFAMVT AQQRPMSQLA RQFAQEIHLL AEEYQSPIFG
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