Gene Avi_8306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8306 
Symbol 
ID7365258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp230638 
End bp231681 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content57% 
IMG OID643641863 
ProductABC transporter nucleotide binding/ATPase protein 
Protein accessionYP_002540160 
Protein GI222080296 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.646948 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCCTATC TTCGTCTGGA TAGACTGCGC AAGGTCTACG GGCCCGCCGT CGCCGTAGAC 
GGCATCAACC TCAATGTTGA AAAAGGGGAG TTCGTATCGC TCCTCGGCCC GTCCGGTTGC
GGGAAAACAA CCACCCTTCA GATGATTGCC GGGTTTGTGG AGCCGACGTC AGGCAGTATT
AGTCTCGATG GTGCCGAGCT TTTGAAGCTT CCGCCCAATC GCCGGGGCCT TGGAATCGTA
TTTCAGAGCT ACGCCCTGTT TCCGCATATG ACAGTTGCCC AAAACCTGTC TTTTGGGCTG
GAAATGCGCG GGGTGTCGAA GGCCGAAATA ACCAAGCGCG TCTCTGAGAT GCTCGATATT
GTTGGCCTTT CCGACAAGGC GGCTCGCTAT CCCCGCCAAA TGTCCGGCGG TCAGCAACAA
CGCGTTGCGC TCGGCCGCGC GCTCATCATA AAGCCTGCAA TCCTGCTTCT CGATGAGCCA
CTTTCCAATC TCGACGCAAA AATGCGCGAG GAAATGCAGA TCGAGTTGAG GCAGATACAA
CAGACCCTCG GCACGACGAC CGTTCTCGTT ACCCATGATC AGCACGAGGC TTTGGCTCTT
TCTGACCGTA TCGTTGTGAT GAGCGCTGCG AAAGTCGAGC AGATCGGCAC ACCCCAAGAC
GTTTACGAAA CTCCGGCCAC TCCTTTCGTG GCGTCGTTTC TGGGCAAGAC GAACGTCTTC
GAGGGAACAA CGTCCGCAGA CGGCCTGACG TTTGGCGATT ACACCGTTCC ATTCAGTCGT
ACCCACGAAG GCCGGGTGTC TTTCTCCGTC CGACCAGAGA AAATCTCGAT GTCGTCTGAG
ACCCAGCCTG GTTTGCGGGG TCGGGTGAAA ACGCGCGTCT TCCAGGGCGA CCACTGGCTC
CTCCAGATCG ATACGGCCGC AGGTCGCGCG ATTGTCGTCA GTCCAAATAA TGGCACTTTC
ATTCCTCTCG AAAACGCCGA GGTCTGTCTC ACCGTCAAGC CGGAAGACCT GATCGTCAGT
AAAGCGGCGG GGGAGCGGAT ATGA
 
Protein sequence
MSYLRLDRLR KVYGPAVAVD GINLNVEKGE FVSLLGPSGC GKTTTLQMIA GFVEPTSGSI 
SLDGAELLKL PPNRRGLGIV FQSYALFPHM TVAQNLSFGL EMRGVSKAEI TKRVSEMLDI
VGLSDKAARY PRQMSGGQQQ RVALGRALII KPAILLLDEP LSNLDAKMRE EMQIELRQIQ
QTLGTTTVLV THDQHEALAL SDRIVVMSAA KVEQIGTPQD VYETPATPFV ASFLGKTNVF
EGTTSADGLT FGDYTVPFSR THEGRVSFSV RPEKISMSSE TQPGLRGRVK TRVFQGDHWL
LQIDTAAGRA IVVSPNNGTF IPLENAEVCL TVKPEDLIVS KAAGERI