Gene Avi_8300 details

Gene Information

• Locus tag: Avi_8300
• Symbol: traR
• ID: 7365253
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: -
• Start bp: 225258
• End bp: 225950
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643641858
• Product: transcriptional regulator TraR
• Protein accession: YP_002540155
• Protein GI: 222080291
• COG category: [K] Transcription
• COG ID: [COG2771] DNA-binding HTH domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGGACAAGC TGACTGATCT TGCCGCGATC GAAGGCGATG AGTGCATCCT GAAGACCGGG 
TTGGCGGACA TCGCCGATCA TTTCGGCTTC ACCGGCTATG CCTACCTCCA TATCCAGCAC 
AGGCACATCA CCGCCGTCAC CAACTATCAT CCCGAGTGGC AGTCGGTCTA TTTCGACAAG 
AAGTTCGACG CTCTCGACCC GGTCGTCAAG CGCGCAAGAT CCCGGAAGCA CATCTTCACC 
TGGTCTGGCG AGCACGAGCG ACCGACACTG TCGAAGGACG AGCGTGCCTT CTATGCCCAC 
GCAGCCGATT TCGGCATCCG CTCCGGCATC ACCATACCCA TCAAGACTGC CAACGGCTCG 
ATGTCGATGT TCACGCTGGC ATCAGAGAAG CCGGTGATTG ATCTCGATCG GGAAATCGAT 
GCAGTGGCAG CCGCGGGAAC CATCGGGCAG ATCCATGCCC GTATCTCATT CCTCCGCACC 
ACCCCTACCG CGGAAGATGC CGCATGGCTC GATCCGAAGG AGGCCACCTA TCTGAGATGG 
ATTGCCGTCG GCAAGACGAT GGAGGAGATC GCCGACGTCG AAGGGGTCAA GTACAACAGC 
GTCCGCGTCA AGCTTCGCGA AGCCATGAAG CGCTTCGACG TCCGCTCCAA GGCTCACCTA 
ACCGCGCTGG CAATCCGACG AAGACTCATT TGA 

 

Protein sequence

MDKLTDLAAI EGDECILKTG LADIADHFGF TGYAYLHIQH RHITAVTNYH PEWQSVYFDK 
KFDALDPVVK RARSRKHIFT WSGEHERPTL SKDERAFYAH AADFGIRSGI TIPIKTANGS 
MSMFTLASEK PVIDLDREID AVAAAGTIGQ IHARISFLRT TPTAEDAAWL DPKEATYLRW 
IAVGKTMEEI ADVEGVKYNS VRVKLREAMK RFDVRSKAHL TALAIRRRLI