| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8264 |
|---|
| Symbol | |
|---|
| ID | 7365227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 197080 |
|---|
| End bp | 197853 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641837 |
|---|
| Product | 18S rRNA intron 1 protein |
|---|
| Protein accession | YP_002540134 |
|---|
| Protein GI | 222080270 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0701764 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATAATCA GCGAAATGCA GCACAAGCTC GCAACATGGG CCGAGAGCGA TCCGAACCGG
AGGTTTGATC GGCTTCTTCG GTTGATTGCC AATCGGGAAT GGCTTGCCGA GACCGCTCGG
ATGGTTCTTG CGTCGAGTGG CGCACGAACG CCGGGTATCG ACGGAATGGA TAAGCAACGA
CTGCAGGTCA AACTGGACCA GCATCTGGAC GACCTGCGGA CAAGCCTGCT GGAGGAGAGT
TATCGCCCCC AGCCGGTCAA GCGCATCTAT ATCCCGAAAC CAAACGGCAA GCTACGACCA
CTGGATATTC CGACCCTGAC GGATCGCATC GTTCAACGCG CCATGTTGAT GGCCATGGGG
CCGATCTGGG AGAGCGATTT CCATCGCTTA TCCTACGGCT TCCGGTCGGA ACGGAACGTG
CATCATGCCG TCCGCACCGT AAGGATACAG CTTCAGGATG GAGCCGACAC GACGAGGGGC
CGCTGGATCA TCGAAGGTGA TCTGGCCAGC TACTTCGACA CGGTCCATCA TCGGCTGCTT
CTGAGATGTG TGCGGCGACG GGTGCAAGAC GGGCGGTTCG TCGATCTTCT CTGGCGGTTC
CTGAAGGCAG GGCACATTGA TCGTGGCCTG TTCACGGCCT CCAGCGAGGG TGTTCCGCAA
GGGGGTTTAT GGTCCGCTGA CCATAAACCC CCTTATGACC AGCGCTGTAA AATGCACAGT
GCTTGGTTGC AGGGGCGGTT TTGTTGGGCT CCTGCACGTA AACACTGCGC ATAA
|
|---|
| Protein sequence | MIISEMQHKL ATWAESDPNR RFDRLLRLIA NREWLAETAR MVLASSGART PGIDGMDKQR
LQVKLDQHLD DLRTSLLEES YRPQPVKRIY IPKPNGKLRP LDIPTLTDRI VQRAMLMAMG
PIWESDFHRL SYGFRSERNV HHAVRTVRIQ LQDGADTTRG RWIIEGDLAS YFDTVHHRLL
LRCVRRRVQD GRFVDLLWRF LKAGHIDRGL FTASSEGVPQ GGLWSADHKP PYDQRCKMHS
AWLQGRFCWA PARKHCA
|
|---|
| |