| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8253 |
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| Symbol | |
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| ID | 7365218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 188557 |
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| End bp | 189786 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643641828 |
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| Product | phage integrase family protein |
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| Protein accession | YP_002540125 |
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| Protein GI | 222080261 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.564196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGATA ACCGTCACCA ACTTATTGCC GCACTCATTT CCTCGCTTCT CAGTCAGCGA
TACAGCCCGG TCGTGGTGAG GAATTACTGC ACCTACGCAT CTGGATTTCT CGATTATCTG
GGACAGCGGG GCATCCCGGT CGCAGATGTG ATCGACGTGC AGGTAGAGCA ATACCTGCGG
CACGCGATCG TAACGTTCGA AAGGGAGCGT GGTCGACGTC CCAGCGCACG CTGGCACGAA
GTTCCGCGTT CCGGGATTCA TGCGCTGTTG CGACTTGCTC ACGGTCAATG GCCGCCAGCA
ATCAAGCCTA TCTGCGCGGC CGATGTGGCC CGATTTGCAG TTTGCGACGA ATACGAAATC
TGGCTGCGTG AGGAACGCGG GTTGGCTCGC TCCAGCGTCG CAGCGCTGAT GTGGGAAGCC
CGGAACTTTC TTGCCTGGCA GATCGATTGC GGAAGCGGCG GCTTGGCGGG GCTGAGCATC
GTTGCCGTAG ACCGTTACAT GGATCTGCGC GCGGCGAAAC TGACGCGCTG CTCGCTGAAG
TCTGTCGCGG AGCGGCTTCG CTCGCTGCTG CGATATCTCC ACATCACGGG TCGCGTCACA
ACGGATCTGT CAGGGCATGT GATAGCTCCG ACGCTTTATG CCTATGAGGG AGTGCCCTCA
ATCCTGGAGC GAGACCAGAT CGCCGCGGTG CTGGAAACCG CGAGGGCGGA CAAGACGCCA
GCGGGGCTGC GGGACTATGC AATCCTGCAA TTCCTTGCAA CATATGGGCT ACGGTCTGGA
GAGATTTGCA ATCTGCGGAT CGAGGACATC GACTGGCGGA CGGAAGCCAT CCATGTTCGC
CACCACAAGA CGCGAGCCAG CACATCGCTG CCCCTGATGG AGCCGGTCGG CGAAGCGTTG
CTTGCTTATC TGCGTTCCGG GCGGCCCGTG ACGGATGCCA GGGAAATCTT CCTCCGCACG
CGCGCGCCCT ATCGCAAGCT CGACAAGCTT TACAGCGTGG TTCGCCGGTT GCTCCGTGAC
GCTGGTGTCC AACCGCCTGG TAAGTGTGGC CCCCATATCT TCCGCCATGC GCGCGCTGTT
GAGATGTTGC GGGTCGCGGT ACCTCAAAAG GTCATCGGCG ACGTGCTGGG GCACCGTTCG
ACAGGATCGA CGGCTCCCTA TCTCAAGCTC GCCACCGAGG ACCTCAGGGC CATTGCGCTT
GAGGTGCCGG GAATGGAGGT GCTGGCATGA
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| Protein sequence | MLDNRHQLIA ALISSLLSQR YSPVVVRNYC TYASGFLDYL GQRGIPVADV IDVQVEQYLR
HAIVTFERER GRRPSARWHE VPRSGIHALL RLAHGQWPPA IKPICAADVA RFAVCDEYEI
WLREERGLAR SSVAALMWEA RNFLAWQIDC GSGGLAGLSI VAVDRYMDLR AAKLTRCSLK
SVAERLRSLL RYLHITGRVT TDLSGHVIAP TLYAYEGVPS ILERDQIAAV LETARADKTP
AGLRDYAILQ FLATYGLRSG EICNLRIEDI DWRTEAIHVR HHKTRASTSL PLMEPVGEAL
LAYLRSGRPV TDAREIFLRT RAPYRKLDKL YSVVRRLLRD AGVQPPGKCG PHIFRHARAV
EMLRVAVPQK VIGDVLGHRS TGSTAPYLKL ATEDLRAIAL EVPGMEVLA
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