| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8250 |
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| Symbol | virA |
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| ID | 7365216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 184278 |
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| End bp | 186821 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643641826 |
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| Product | two-component VirA-like sensor kinase |
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| Protein accession | YP_002540123 |
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| Protein GI | 222080259 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.467726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTGGG ATCATTTATC ACCTTCCCGC AGGGTTCTGC TCGATATCAA ATCATGGTCT
GTATTGGTAT TGGTAATGGC CGCGATATTT TTTGCGGTTC TGGCCATAGG ATCTTGGCAA
GACAACGAAA GCAACGAAGC AATCCTGACA GAGCTGCAAT CGATCGAAGT GAATTGCGCA
ATGCTGCAGC GAAACGTGTT GCGTGCTCAC GCCGGCCTTC TTCGAAATTA CCATCCTCTC
ATCGTTCCTT TGGGACGAAT GCGTACGAGC GTGGCGGATC TGCAGCAGCT TTTAAAGCAG
GCGGGCCTTG GCGAGGCCGG CGAATTTTCT GAACTACTGG CGCGGATGAA GAGGTCAGTA
GATGCGACCG GCGCAGCCGT TGCAGCGTTC GGTAGGCAAA ATGTAATGTT TCAGGATTCG
GTGGCGACCT TTAACCAGTC GATAGCTTCG CTGCAGAGTT CCTTGGATAC GAGAGATTTG
AATTCGCTAG AAGTCTCTGA ACTGGGCTAT CGGATGCTCC AGTTTTCGTC TCAGCCAAAT
TTCGAGCTTG CTCGGGAGAT TAACCAACGT CTCGGCCGGC TTCAGGTTTC GGCGAGTCGG
GATACGGCAG GCGTCCAAGA GATCGTCCGC AGCGCGAGGA TTATTCTGAC CCTACTGCCG
CGATTGGAAG GCACCATTGG AGTGATCCAA GCTTCTGAAA CAGTCGCTAA CACGAAGAAA
TTGCAACGAG CATACTTGGA AGCTTACAGC TTGGCCAGTG CCGGTGAACA GCGGGTACGA
TTCTTCCTCG GCGCCGTTTC GGTTTTCTTT TGCTTTTGCA TAATTTCCTT GGTCCGTAGG
TTACATCTGC GAACCAAAGT GTTGACGAGG CGACTGGACT TCGAAGAAGT GATCAAAAGG
ATCGGGCTCT GCTTCGAAGA TTCTGCAGCA GCAAAACCGT CGTTGGAATC CTCAACCAAC
GCCGCGCTGG GAATTATCCA ATCATTCTTT GCAGCTCATC AATGTGTGCT GGGATTAGTA
GACGTCAATG AGAATGATAT TGCCGGCACC TTTTTTGGAA ACAATCCTCC GCCAAAATGG
AATGAACGAC GGGTTCGCGA TATTGCTTCC AAGGTAGAGT CTGAGGAGGG CGGGCGGGTC
TTCCGAGACT ATCCTCTACG AAAAACGAGC TGCTTTGGTG AGGATTCTCC TTGTCTGTGG
GTGCAGCTTG CGTTCAAGGT ATCCGATCGA ATAGTCGCTA TCTTCGGCCT AGGATTTGAT
CGAGAGTATC TACAGCCGCC GACCTCATGT GAAATGCAGC TTATGGAACT GGCGGCTGGG
TGTGTTAGCC ACTATACGGT CATTAGGCGC AAGCAATCCC AGCGAGATAT TCTAGAACGT
CGTTTAAAAC ATGCGGAACG GCTTGAAGCA GTTGGTACGC TCGCCGGCGG CATTGCCCAT
GAATTCAACA ACATTTTAGG TGCAGTTCTC GGTTACGCTG AAATGGCGCA CAACGTTCTG
CGCCGCCGTA CTCATGCTCG CGACTATATC GATCACATCA TTTCCGAAGG CAATCGAGCG
CGGTTAATCG TCAACCAGAT CCTTGCCCTT AGTCGAAAGC GTGACCGAAC AACAAAACCA
TTCGATCTTT CGGAATTGGT GACGGTAATC GCGCCGTCGT TACGGGTTGG GTTGCCTCCG
GGCGTCGAGC TCGATTTTGA ATTTCATGGC CATCCAATGG TTGTCGAAGC CAACCCACTT
GAGATCGAGC AGATACTGAT GAATTTGTGC AAAAATTCCG CTGAAGCATG CTTAGGATCA
GGGCGTGTGG AGGTCAGCGC AAGAAGGTCT ATCATAAGGA AGTACAAGGT GCTTGCGAGC
GGAACCATTC CCACCGGTGA GTATGTCCTT CTTTCAGTCG AGGACAACGG CGCAGGCATA
ACAGAGGACG CACTACCGCA CATTTTCGAG CCTTTCTTCA CTACTCGCGC CCGCAGCGGT
GGCACGGGCT TGGGATTATC CACGGTTCAC GGTCACGTTA GCGCTATGGC TGGTTACATC
GACGTGGTAT CAATTGTCGG CAGGGGTACG CGCTTCGACC TCTACCTGCC ACCTTCATCG
AAGCAGCCTG TAAATTCACA GAGTTTTTTT GAGCCTGGAA GAATCCCGCT CGGGAACGGA
GAGATTGTCG CGGTGGTCGA ACCCGACATT GCGACGCTGG AAAGGTACGA GGAGATGATC
GCGGCGCTCG GCTATGAACC AGTCGGCTTT AACACGTTGA ATGGTCTAAT CGACTGGGTG
TTGGAAGGTA AAGAACCTGA TCTTGTTCTA ATTGACCAAC CGTCTTTTCT GGATGAAGAC
GGTCCAGTGT CCTTACTCTC AAAGTTAGCA AAATCGCCTG TCATCATTGT TGGGGAGAAC
CCGAAAAATG TTCCCCTTTC GGCGGATCGG GAGGGATCTG CCCGTTTTTT GAAAAAGCCG
ATTTCAGCCA AGACGCTCGC CTACGTAGTT CGTGCGAATA TCAGAACCCA ACTACGGATA
GCTCGAAAAG CACCGACATG GTGA
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| Protein sequence | MVWDHLSPSR RVLLDIKSWS VLVLVMAAIF FAVLAIGSWQ DNESNEAILT ELQSIEVNCA
MLQRNVLRAH AGLLRNYHPL IVPLGRMRTS VADLQQLLKQ AGLGEAGEFS ELLARMKRSV
DATGAAVAAF GRQNVMFQDS VATFNQSIAS LQSSLDTRDL NSLEVSELGY RMLQFSSQPN
FELAREINQR LGRLQVSASR DTAGVQEIVR SARIILTLLP RLEGTIGVIQ ASETVANTKK
LQRAYLEAYS LASAGEQRVR FFLGAVSVFF CFCIISLVRR LHLRTKVLTR RLDFEEVIKR
IGLCFEDSAA AKPSLESSTN AALGIIQSFF AAHQCVLGLV DVNENDIAGT FFGNNPPPKW
NERRVRDIAS KVESEEGGRV FRDYPLRKTS CFGEDSPCLW VQLAFKVSDR IVAIFGLGFD
REYLQPPTSC EMQLMELAAG CVSHYTVIRR KQSQRDILER RLKHAERLEA VGTLAGGIAH
EFNNILGAVL GYAEMAHNVL RRRTHARDYI DHIISEGNRA RLIVNQILAL SRKRDRTTKP
FDLSELVTVI APSLRVGLPP GVELDFEFHG HPMVVEANPL EIEQILMNLC KNSAEACLGS
GRVEVSARRS IIRKYKVLAS GTIPTGEYVL LSVEDNGAGI TEDALPHIFE PFFTTRARSG
GTGLGLSTVH GHVSAMAGYI DVVSIVGRGT RFDLYLPPSS KQPVNSQSFF EPGRIPLGNG
EIVAVVEPDI ATLERYEEMI AALGYEPVGF NTLNGLIDWV LEGKEPDLVL IDQPSFLDED
GPVSLLSKLA KSPVIIVGEN PKNVPLSADR EGSARFLKKP ISAKTLAYVV RANIRTQLRI
ARKAPTW
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