| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8224 |
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| Symbol | virB4 |
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| ID | 7365114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 165443 |
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| End bp | 167812 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641812 |
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| Product | type IV secretion system protein VirB4 |
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| Protein accession | YP_002540109 |
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| Protein GI | 222080245 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGGAG CAAATGGACG GACCGAGAGA TCTGGGGAAA TCTACCTGCC TTACGTGGGG
CACCTTAGCG ACCATATCGT TCTTCTGGAG GACGGTTCCA TCTTGACCAT GGCGCATATC
AGTGGCCTTC CCTTCGAACT AGAGGAAGTA GAGGTCCGTA ATGCGCGCTG CCGTGCCTTT
AACACGCTCT TTCGCAATAT CGCCGATGAT AACGTCTCAG TATATGCCCA TCTCGTCCGT
CACAGCGATG TGCCAGCACC GCCGGTACGC CATTTTCGCA GCGCCTTCGC GTCAAGCCTA
AGCGAAACGT TCGAGCAGCG TGTTCTCTCC GGTAAGCTGT TTCGAAATGA CCACTTCCTA
ACACTCATTG TTTCTCCTCG CACCGCTCTC GGCAAAGTGA GAAGCAGATT CACCACGCGC
TATGGGAAAA ACCTAGGCGA TCTTGCGCAT CAGATCCGGC ATCTGGAGGA TCTTTGGAAT
ATTGTCGCTG GCGCGCTTGA CGGGTATGGA CTTCGTCGCC TTGGCATCCG AGAAAAAAAT
CAGGTGCTTT TCACGGAAAT TGGTGAAGCC CTCCGCCTGA TAATGACTTG CCGTTTTCTA
CCAGTGCCGG TTGTTAGCGG CTCCCTCGGC GCCGCCGTTT ATACAGACCG AGTCATCTGC
GGTAAGCGTG CCCTAGAGAT TAGAGCGCCA AAAGATCGTT ACGTTGGATC AATCTTTTCA
TTCCGCGAAT ATCCGGCAAA GACGCGGCCC GGAATGCTTA ACATACTCCT GTTATCAAGT
TTTCCACTCG TTTTGAGCCA GAGTTTCTCT TTCTTAACAC GTGCACAGTC TCACGCCAAA
CTCAGCCTTA AATCTAACCA GATGACCAGC TCGGGTGACA AAGCAGTCAC CCAGATCGGT
GAGCTCGCCC AAGCAGAAGA TTCATTGGCC AGTAGCGAAT TCGTTATGGG TTCTCATCAT
CTCAGCCTTT GCGTCTATGC CGATGATCTC GATACCCTTG CCGACTACGG TGCGCGAGCC
CGCACAAGCT TGTCGGACGC GGGGGCTGTA ATCGTGCAGG AAAGCATTGG AATGGAGGCT
GCATACTGGT CTCAGTTTCC AGGAAACCAT AGATGGCGTA CCCGTCCTGG AGCTATCACG
TCACGTAACT TTGCTGGATT GGTTTCATTC GAAAACTTCC CTATCGGCAG AAAGTCGGGC
CATTGGGGCG GTGCGGTTGC TCGTTTCCGT ACAAACGGCG GGACACCCTT CGATTATATT
CCGCACGAAA ACGACGTTGG TATGACCGCG ATCTTCGGGC CGATTGGCAG AGGAAAAACA
ACACTTATGA CCTTCATCCT GGCAATGCTC GAGCAGAGCA TGGCTGGCCG CAGCGGGACG
ATCGTTTTTT TCGATAAGGA TCGTGGCGGT GAACTGCTTG TGCGTGCCAC GGGGGGCACT
TACCTAACGC TACGAAGAGG TGTCCCAAGC GGTCTTGCAC CTTTGCGCGG CCTAGAGGAT
ACGGCAGCGG CGAGGGACTT TCTCCGCGAG TGGATCGTGG CACTGATTGA AAGCGACGGC
AGGGGAGGGA TTTCACCGGA AGAAAATCGC CGCTTAGAGC GCGGTATTCA ACGGCAACTC
TCATTTGAGC CAAACATGAG ATCCCTTGCG GGCCTAAGGG AGTTCTTATT GCACGGCCCC
TCCGAAGGAG CGGGAGCTAG GTTGCAGCGG TGGTGCCGAG GCAATGCTCT CGGCTGGGCG
TTTGACGGGG AATCGGACGA AGTGAAGTTA GATCCTTCGA TTACGGGCTT CGATATGACG
CATCTCCTCG ACTATGAGGA GGTATGTGCG CCAGCCGCAG CATATCTTTT GCATCGAATA
GGAGCGATGG TAGATGGTCG GCGCTTCGTT ATGAGCTGCG ATGAGTTTCG TGCCTACCTG
CTTAATCAGA AATTTGCAGC AGTCGTTGAC AAGTTCCTGC TGACCGTCCG GAAGAACAAC
GGAATGTTGA TTCTTGCGAC ACAACAGCCC GAGCACGTAC TCGATTCACC GTTGGGCGCA
AGCCTTGTAG CACAATGTAT GACCAAAATT TTCTACCCAT CACCCACTGC AGACCGCTCT
GCTTACATAG ACGGGTTGAA GTGCACCGAA CGAGAATTTC AGGCTATTCG CGAGGACATG
GCGATCGGCA GCCGCAAGTT CTTGCTTAAG CGCGAGAGCG GAAGTGTCGT CTGCGAATTT
GATCTGCGCG ATATGTCAGA ATACGTCGCC GTTCTCTCCG GACGCGCCAA CACTGTGCGT
TTTGCTCAAC AGTTGCGCGA GACCTGTGGA GAGGATCCCT CTGCCTGGCT GGACGAATTT
ATGACGCGCT ACCGCGAGGC ACAGGATTGA
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| Protein sequence | MFGANGRTER SGEIYLPYVG HLSDHIVLLE DGSILTMAHI SGLPFELEEV EVRNARCRAF
NTLFRNIADD NVSVYAHLVR HSDVPAPPVR HFRSAFASSL SETFEQRVLS GKLFRNDHFL
TLIVSPRTAL GKVRSRFTTR YGKNLGDLAH QIRHLEDLWN IVAGALDGYG LRRLGIREKN
QVLFTEIGEA LRLIMTCRFL PVPVVSGSLG AAVYTDRVIC GKRALEIRAP KDRYVGSIFS
FREYPAKTRP GMLNILLLSS FPLVLSQSFS FLTRAQSHAK LSLKSNQMTS SGDKAVTQIG
ELAQAEDSLA SSEFVMGSHH LSLCVYADDL DTLADYGARA RTSLSDAGAV IVQESIGMEA
AYWSQFPGNH RWRTRPGAIT SRNFAGLVSF ENFPIGRKSG HWGGAVARFR TNGGTPFDYI
PHENDVGMTA IFGPIGRGKT TLMTFILAML EQSMAGRSGT IVFFDKDRGG ELLVRATGGT
YLTLRRGVPS GLAPLRGLED TAAARDFLRE WIVALIESDG RGGISPEENR RLERGIQRQL
SFEPNMRSLA GLREFLLHGP SEGAGARLQR WCRGNALGWA FDGESDEVKL DPSITGFDMT
HLLDYEEVCA PAAAYLLHRI GAMVDGRRFV MSCDEFRAYL LNQKFAAVVD KFLLTVRKNN
GMLILATQQP EHVLDSPLGA SLVAQCMTKI FYPSPTADRS AYIDGLKCTE REFQAIREDM
AIGSRKFLLK RESGSVVCEF DLRDMSEYVA VLSGRANTVR FAQQLRETCG EDPSAWLDEF
MTRYREAQD
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