| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8221 |
|---|
| Symbol | virB8 |
|---|
| ID | 7365111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 162905 |
|---|
| End bp | 163618 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643641808 |
|---|
| Product | type IV secretion system protein VirB8 |
|---|
| Protein accession | YP_002540105 |
|---|
| Protein GI | 222080242 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACT CTGAATACGC GCTATTGGTA GAGCGGGAAG CATTGGCGGA CCACTATAAG
GAAGTAGAAG CATTTCAGTC CGCACGTGCT CGATCAGCTC GGCGAATCTC CAGAGCCTTG
GCTGCTTTGG CAATCATTGC AGTCGCAGGA AACCTGGCGC AGGCCTTCGC CATCGCCGTT
ATGGTTCCGT TGAACAAACT TGTGCCCGTA TATCTGTGGG TGCGCCCGGA CGGTACAGTT
GACAGTGAAG TATCTGTTTC GCGGTTGCCG GCCACGCAGG AGCAGGCGGT CGTGAATGCG
TCTCTATGGG AGTATGTCCG TCTGCGTGAG AGCTACACAT CGGATACAGC TCAATACGCC
TATGATCTGG TCTCGAGCTT TAGTGCCCCA ACGGTGCGCC AAGATTATCA GCAGTTCTTC
AATTATCCCA GTCCTAGCTC CCCCCAAACC ATCATTGGTA AGCGCGGAAA ACTGGAATCT
GAGCACATCT CTTCAAACGA ACTTATGCCC GGCGTTCAGC AGATCCGCTA CAAACGCACT
CTCACCATGG AAGGGCAAGC TCCAATAGTA ACGACATGGA CCGCAACGGT ACACTATGAA
ACGGTAGCTA ACTTGCCAGG CCGACTGAGG CTGACAAATC CGGGCGGTTT AATCGTTACC
TCCTATCAAA CTTCGGAAGA TTCCGTTTCG AACACGACGC GGAGCCAGCA ATGA
|
|---|
| Protein sequence | MIDSEYALLV EREALADHYK EVEAFQSARA RSARRISRAL AALAIIAVAG NLAQAFAIAV
MVPLNKLVPV YLWVRPDGTV DSEVSVSRLP ATQEQAVVNA SLWEYVRLRE SYTSDTAQYA
YDLVSSFSAP TVRQDYQQFF NYPSPSSPQT IIGKRGKLES EHISSNELMP GVQQIRYKRT
LTMEGQAPIV TTWTATVHYE TVANLPGRLR LTNPGGLIVT SYQTSEDSVS NTTRSQQ
|
|---|
| |