| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8220 |
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| Symbol | virB9 |
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| ID | 7365110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 162030 |
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| End bp | 162908 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641807 |
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| Product | type IV secretion system protein VirB9 |
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| Protein accession | YP_002540104 |
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| Protein GI | 222080241 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.514909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGA ATTTGTTTCT GGGCTTGGTT TGCATCCTCT TTGTAACTAG TGGCGCGAAG
GCGGAAGACA CGCCGGCGGC AGGCAAAATG GATCCACGGA TGCGCTATCT CGCCTACAAT
CCCGATGAGG TTGTGCACCT TTCAACCGCT GTTGGAGCCA CATTAGTCGT GACATTTGGG
CCCAATGAAA CGGTGACAGC CGTCGCCGTT TCCAATAGCA AAGATCTCGC TGCGCTCCCA
CGCGGCAATT ATCTATTTTT CAAGGCCAGC AAAGTGCTGC AGCCGCAGCC TGTGATCGTC
CTTACCGCAA GCGACGCGGG AATGCGGCGC TATGTTTTCA GCCTAGCGAC CAAAACGATG
TCTCGGCTCG ATAAAGAGCA GTCTGACCTC TACTACAGCG TGCAGTTCAC TTATCCTGCC
GACATTGCCG CTGCTCGCCG AAAAGAAGCC GAACAGAGAG ATCTTGCGGG TCTGATGCGG
GCGCAAGCAC AATATCAGCG TCGAGCCGAG GACTTGCTGG GACGCCCGGC AGAAGGTGGC
GACTCAGGCG CGAAAAACTG GAGTTATGTC GCGCAAGGAG ACCGGTCGCT ATTGCCGATC
GAGGTTTTCG ACAACGGGTT TTCCACGACA TTTCGTTTTC CCGGAAACGT ACGTGTGCCT
TCAATCTACG TGATCAATCC AGATGGCAAG GAAGCCACTG CCAATTATTC AGTGAAGGGA
GATTACGTCG AGGTCGCATC AGTTTCCAGG GAATGGCGCC TGCGGGACGG TCATACAGTA
CTGTGCATTT GGAATAAATC ATTTGACGTT GTCGGACGGA AGCCGGGGAC TGGCACAGTC
AGACCCGATG TAGTGCGCGT GTTGAAGGAG CCGAGGTGA
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| Protein sequence | MTKNLFLGLV CILFVTSGAK AEDTPAAGKM DPRMRYLAYN PDEVVHLSTA VGATLVVTFG
PNETVTAVAV SNSKDLAALP RGNYLFFKAS KVLQPQPVIV LTASDAGMRR YVFSLATKTM
SRLDKEQSDL YYSVQFTYPA DIAAARRKEA EQRDLAGLMR AQAQYQRRAE DLLGRPAEGG
DSGAKNWSYV AQGDRSLLPI EVFDNGFSTT FRFPGNVRVP SIYVINPDGK EATANYSVKG
DYVEVASVSR EWRLRDGHTV LCIWNKSFDV VGRKPGTGTV RPDVVRVLKE PR
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