| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8217 |
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| Symbol | virG |
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| ID | 7365107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 158885 |
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| End bp | 159610 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641804 |
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| Product | two-component response regulator VirG |
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| Protein accession | YP_002540101 |
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| Protein GI | 222080238 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.206668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAAACACG TTCTTGTCAT TGATGACGAT GCCGCGATGC GCCATCTTAT CACGGAGTAT
CTAACGATCC ACGCGTTGAG GGTGACCGCC GTATCCGATA GTCAGCAATT CAACCGCGTA
CTCGCATCCG AGACAGTCGA TGTCGTTGTC GTGGATCTCA ACCTGGGACG TGAGGACGGA
CTTGAGATCG TGCGCGGTCT GGCCACGAAA TCCGATATCC CTATAATAAT CATCAGTGGA
GACCGCCTCG AAGAGGCGGA TAAAGTTGTC GCGCTCGAGC TGGGGGCCAC GGATTTCATA
GCAAAACCTT TTGGGACACG CGAGTTCCTG GCACGCATCC GTGTGGCATT ACGCGTGCGA
CCGAATGTCA TGCGAACCAA AGACCGGCGC TCATTTTGTT TCGCTGGCTG GACACTTAGT
CTCAGACAAC GGCGGTTGAC ATCCACAGAC AATGGCGAGG TGAAACTGAC TGCTGGGGAA
TTTAACCTGC TCGTCGCGTT CTTGGAAAAG CCTCGCGACG TCCTTTCTCG AGAGCAGCTG
CTCATCGCGA GCCGCGTGCG TGACGAGGAA GTATATGACA GAAGCATCGA TGTTCTCATT
TTGAGACTGC GCCGAAAGCT TGAAGAGGAT TCAGCCAGCC CACACTTGAT TAAAACGGCC
AGGGGTGCCG GCTATTTCTT CGACGCCGAT GTGAATGTCT CCTTCGGCGG CATGATGGCG
GCTTAA
|
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| Protein sequence | MKHVLVIDDD AAMRHLITEY LTIHALRVTA VSDSQQFNRV LASETVDVVV VDLNLGREDG
LEIVRGLATK SDIPIIIISG DRLEEADKVV ALELGATDFI AKPFGTREFL ARIRVALRVR
PNVMRTKDRR SFCFAGWTLS LRQRRLTSTD NGEVKLTAGE FNLLVAFLEK PRDVLSREQL
LIASRVRDEE VYDRSIDVLI LRLRRKLEED SASPHLIKTA RGAGYFFDAD VNVSFGGMMA
A
|
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