Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8210 |
Symbol | virD4 |
ID | 7365101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 150781 |
End bp | 152772 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643641798 |
Product | type IV secretion system protein VirD4 |
Protein accession | YP_002540095 |
Protein GI | 222080232 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.493038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATGAATT CAGGCAAGTA CACGCCAATA GGCCTAGCTG CGATCATTGC ATGTTCACTG GCCGTTGGTT TTTGTGCAGC AAGTCTCTAT GTCACATTTC GCCATGGATT TACGGGCGAA AAGATGATGA CTTTCAGCGT TTTTACGTTC CTGTACGAGA CACCACCTTA CTTGGGGTAC GCAAGCCCTA CGTTCTACCG CGGACTTGCC ATCATCGTGG TGACGTCGAC AGTTGTGTTG CTAGGCCAAC TGTTGTTATC GATGCGCGAT CGCCAACATC ACGGCACCGC TCGCTGGGCC GGTTCAAGCG AGATGCGGCA CGCCAAATAC CTCCAGCGCT ACAGTCACGT CACGGGTCCC ATATTCGGCA AAACATGCGG ACCGCGCTGG TTCGGTAGCT ACCTGAGTAA TGGAGAACAA CCTCACAGTC TTGTTGTTGC CCCAACCCGC GCTGGTAAGG GCGTAGGCGT CGTTATCCCG ACGTTGCTAA CCTTTAAGGG CTCAGTAATC GCTTTGGATG TGAAAGGCGA GCTATTTGAA CTCACATCGA GGGCGCGCAG ATCAAGCGGC GACGCCGTTT TCAAGTTCTC GCCCCTAGAT CCAGAGCGGC GAACCCACTG TTACAACCCC GTGCTTGATA TTGCCGCGTT GCCGGCCGAA CGGCGCTTTA CAGAAACGCG TCGCCTTGCT GCGAATCTCA TCACAGCCAA AGGAAAGGGA GCGGAGGGTT TCATCGACGG CGCACGGGAT CTTTTCGTAG CAGGCATATT GAGTTGTATT GAGCGCGGCA CACCAACGAT CGGCGCGGTT TACGACCTGT TCGCTCAGCC GGGCGAAAAA TACAAGCTAT TTGCGCAACT GGCGGAGGAA ACACAAAACA AAGAGGCTCA GCGAATCTTC GACAATATGG CCGGAAATGA CACCAAAATA CTGACGTCCT ACACATCGGT GCTCGGCGAC GGCGGCCTCA ATCTTTGGGC CGATCCACTC GTTAAGGCGG CTACAAGCCG CTCGGATTTT TCCGTCTACG ATTTGCGGCG GAAAAAGACT TGCATTTATC TTTGTGTCAG CCCGAATGAT CTCGAAGTCG TAGCGCCGTT GATGCGTCTT CTCTTCCAGC AGGTTGTATC AATCCTGCAG CGATCGCTGC CCCTTGGGGA TGAACGGCAC GATGTTCTAT TTCTCCTCGA TGAGTTCAAG CACCTGGGCA AGCTGGAAGC CGTAGAGACG GCGATTACTA CGATCGCCGG CTACAAGGGC CGCTTCATGT TCATCATACA GAGCCTGTCG GCTTTGACCG GAACCTATGA TGAAGCTGGT AAGCAAAATT TCCTCAGCAA TACTGGTGTG CAGGTATTCA TGGCGACCGC TGATGACGAG ACGCCAACCT ACATTTCTAA AGCTATCGGC GACTACACGT TCCAAGCTCG CTCGACTTCG TACAGCCAAG CGCGCATGTT TGATCACAAC ATCCAAATCT CCGAACAAGG AGCGCCGCTT CTGCGTGCCG AACAGGTCCG CCTACTCGAC GATGACCATG AAATAGTCCT TATCAAGGGC CAACCTCCCC TTAAACTGCG AAAAGTGCGA TATTATTCGG ATCTCATATT GAAGCGGCTC TTCGAAAGCC AACAGGGTTC CCTTCCCGAG CCCGCATCTT TGAGGCTGCC GGAAGATACG AACATCTTCG AAGGCAAGCT TGACCAGAAA GCAGTCGATC CAATATCGCA AAAACCGGTG CAGATTGAAG AGAGCGACTA CGGGAAAGTC GTTACCCCCG TAAGCAGACC TGTGGCCGAG GGAGAGCACA GCGCGGTGAT AGAAGTTCGC ACCGGTTCAA ACGAAGTTGA TGACAAACAT GAATACAGGG GCGCGGACGC CGCAACCTCC GAGGAGCTTC TGGACATTGC TCCAGCTCTT CTGGCGCAAC GCGAACTCCT TGAACAGATC ATTTCTCTCC AGCAACGAGG TGGAACAGAT TCCGGCACTT GA
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Protein sequence | MMNSGKYTPI GLAAIIACSL AVGFCAASLY VTFRHGFTGE KMMTFSVFTF LYETPPYLGY ASPTFYRGLA IIVVTSTVVL LGQLLLSMRD RQHHGTARWA GSSEMRHAKY LQRYSHVTGP IFGKTCGPRW FGSYLSNGEQ PHSLVVAPTR AGKGVGVVIP TLLTFKGSVI ALDVKGELFE LTSRARRSSG DAVFKFSPLD PERRTHCYNP VLDIAALPAE RRFTETRRLA ANLITAKGKG AEGFIDGARD LFVAGILSCI ERGTPTIGAV YDLFAQPGEK YKLFAQLAEE TQNKEAQRIF DNMAGNDTKI LTSYTSVLGD GGLNLWADPL VKAATSRSDF SVYDLRRKKT CIYLCVSPND LEVVAPLMRL LFQQVVSILQ RSLPLGDERH DVLFLLDEFK HLGKLEAVET AITTIAGYKG RFMFIIQSLS ALTGTYDEAG KQNFLSNTGV QVFMATADDE TPTYISKAIG DYTFQARSTS YSQARMFDHN IQISEQGAPL LRAEQVRLLD DDHEIVLIKG QPPLKLRKVR YYSDLILKRL FESQQGSLPE PASLRLPEDT NIFEGKLDQK AVDPISQKPV QIEESDYGKV VTPVSRPVAE GEHSAVIEVR TGSNEVDDKH EYRGADAATS EELLDIAPAL LAQRELLEQI ISLQQRGGTD SGT
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