Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8200 |
Symbol | repB |
ID | 7365095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | + |
Start bp | 142940 |
End bp | 143977 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643641794 |
Product | replication protein B |
Protein accession | YP_002540091 |
Protein GI | 222080228 |
COG category | [K] Transcription |
COG ID | [COG1475] Predicted transcriptional regulators |
TIGRFAM ID | [TIGR00180] ParB-like partition proteins [TIGR03454] plasmid partitioning protein RepB |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGTCA ATCCCGAGGA ACGAAGCCAG CAGATGAACA GCTTGTTCGG GCACATCGAT ACTGACGGTC TCGCGAAACA ATCGTCGCCC TTACGTTTCG GGCAGGAAAA GCTGCGTGTT GGCTCGGCGG TCGTCAAGTC AATGGATCGT GCGTTCGTTT CAATCGAAGA TGAGAATAGG CGTCTTCATA ATCAGTTGCT TTCATCAGGA TCAGCCGTTG AACTCGACCC TGATCGCGTC GCTCCATCGT TCATTAATAA TCGCTTGGAC ATCGAAGGCG ATGAGAGCTT TCATACGTTC GTCGAAGGTA TCAAAGAGGC TGGACAGAAG CTTCCCATTC TCGTGCGTCC CTTGGCGGGG AAGCTGGCTC ACTATCGAGC TGCCTACGGC CACCGACGCC TCCCCGCGTG CCAGATATTG AAGCGTTCCG CCAAGGCGAT CGTACGTGAG TTGAGCGACG AGGAACCCGT TGTTTCACAA GGGATCGAGA ACTCGGAGCG TCTCAATCTA TCTTTCAATG AGCAGGCGCT ATTTGCCTTG AACCTAAAAG AGCGGAAATA CTCGCGGGAG CTGATATCAG ACGCGCTAGG TCGCAATCAG GGCCAGCGCC GCGCCTATAT CTCGATCCTT ATAAATACGG CTGCGCTGAT TCCTGAAGAG CTCATCCGGC CGATGGGATC GCCGCCCTCC ATGGGGCGTC CAAAATGGGA AAAGCTGGGG GCTTTCATTA ATAATCGAAA TCTGAGCGCT CGGCGGAAGA AAATCCTCGC AGATGTCACT GCCTCTCCTG CATGGGAGAA AATCGGAAGC GCCCGGCGGT TCGCATTGAT CATGACTGCC TTCAATCGTT CTACTAAATG CGGGCCAGAC TTGGTCGAAG TGTCGCTGGA CGATGGTATT ATCATTGTAG CAAAACAAAC CGATAAGCCG ACACATATTT CAATTCCTGA CAATCGCTTT CCCGGGCTTT CGGACTGGCT GCTGCAACGG CTACCCGATC TTTTTGAAGA GTTTCAATGG GACAACGAAA GGTTTTAG
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Protein sequence | MMVNPEERSQ QMNSLFGHID TDGLAKQSSP LRFGQEKLRV GSAVVKSMDR AFVSIEDENR RLHNQLLSSG SAVELDPDRV APSFINNRLD IEGDESFHTF VEGIKEAGQK LPILVRPLAG KLAHYRAAYG HRRLPACQIL KRSAKAIVRE LSDEEPVVSQ GIENSERLNL SFNEQALFAL NLKERKYSRE LISDALGRNQ GQRRAYISIL INTAALIPEE LIRPMGSPPS MGRPKWEKLG AFINNRNLSA RRKKILADVT ASPAWEKIGS ARRFALIMTA FNRSTKCGPD LVEVSLDDGI IIVAKQTDKP THISIPDNRF PGLSDWLLQR LPDLFEEFQW DNERF
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