Gene Avi_8200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8200 
SymbolrepB 
ID7365095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp142940 
End bp143977 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content53% 
IMG OID643641794 
Productreplication protein B 
Protein accessionYP_002540091 
Protein GI222080228 
COG category[K] Transcription 
COG ID[COG1475] Predicted transcriptional regulators 
TIGRFAM ID[TIGR00180] ParB-like partition proteins
[TIGR03454] plasmid partitioning protein RepB 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGTCA ATCCCGAGGA ACGAAGCCAG CAGATGAACA GCTTGTTCGG GCACATCGAT 
ACTGACGGTC TCGCGAAACA ATCGTCGCCC TTACGTTTCG GGCAGGAAAA GCTGCGTGTT
GGCTCGGCGG TCGTCAAGTC AATGGATCGT GCGTTCGTTT CAATCGAAGA TGAGAATAGG
CGTCTTCATA ATCAGTTGCT TTCATCAGGA TCAGCCGTTG AACTCGACCC TGATCGCGTC
GCTCCATCGT TCATTAATAA TCGCTTGGAC ATCGAAGGCG ATGAGAGCTT TCATACGTTC
GTCGAAGGTA TCAAAGAGGC TGGACAGAAG CTTCCCATTC TCGTGCGTCC CTTGGCGGGG
AAGCTGGCTC ACTATCGAGC TGCCTACGGC CACCGACGCC TCCCCGCGTG CCAGATATTG
AAGCGTTCCG CCAAGGCGAT CGTACGTGAG TTGAGCGACG AGGAACCCGT TGTTTCACAA
GGGATCGAGA ACTCGGAGCG TCTCAATCTA TCTTTCAATG AGCAGGCGCT ATTTGCCTTG
AACCTAAAAG AGCGGAAATA CTCGCGGGAG CTGATATCAG ACGCGCTAGG TCGCAATCAG
GGCCAGCGCC GCGCCTATAT CTCGATCCTT ATAAATACGG CTGCGCTGAT TCCTGAAGAG
CTCATCCGGC CGATGGGATC GCCGCCCTCC ATGGGGCGTC CAAAATGGGA AAAGCTGGGG
GCTTTCATTA ATAATCGAAA TCTGAGCGCT CGGCGGAAGA AAATCCTCGC AGATGTCACT
GCCTCTCCTG CATGGGAGAA AATCGGAAGC GCCCGGCGGT TCGCATTGAT CATGACTGCC
TTCAATCGTT CTACTAAATG CGGGCCAGAC TTGGTCGAAG TGTCGCTGGA CGATGGTATT
ATCATTGTAG CAAAACAAAC CGATAAGCCG ACACATATTT CAATTCCTGA CAATCGCTTT
CCCGGGCTTT CGGACTGGCT GCTGCAACGG CTACCCGATC TTTTTGAAGA GTTTCAATGG
GACAACGAAA GGTTTTAG
 
Protein sequence
MMVNPEERSQ QMNSLFGHID TDGLAKQSSP LRFGQEKLRV GSAVVKSMDR AFVSIEDENR 
RLHNQLLSSG SAVELDPDRV APSFINNRLD IEGDESFHTF VEGIKEAGQK LPILVRPLAG
KLAHYRAAYG HRRLPACQIL KRSAKAIVRE LSDEEPVVSQ GIENSERLNL SFNEQALFAL
NLKERKYSRE LISDALGRNQ GQRRAYISIL INTAALIPEE LIRPMGSPPS MGRPKWEKLG
AFINNRNLSA RRKKILADVT ASPAWEKIGS ARRFALIMTA FNRSTKCGPD LVEVSLDDGI
IIVAKQTDKP THISIPDNRF PGLSDWLLQR LPDLFEEFQW DNERF