| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8188 |
|---|
| Symbol | |
|---|
| ID | 7365088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | + |
|---|
| Start bp | 132911 |
|---|
| End bp | 134464 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643641790 |
|---|
| Product | aldehyde dehydrogenase |
|---|
| Protein accession | YP_002540087 |
|---|
| Protein GI | 222080224 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.738574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGCC ATCCGAGCGA AGAGGAGAGT GGTCGGAAGG CTGGAATCCA AATTTTTACG
ATCGACGGCC TACCCCTGAT TTCGGGACGG CCGGCCACTA CAATCAAACG AAAGGGTACT
GCAATGGCAC CTCGTCCTAG CATCTATATC GACAATACTT GGCAGCCGGC CACCGGAGGC
GATACGTTCT GGGCGGTGAA CCCGTCCACC GAAGAAGCAT TTGCCGAGTT TCAGATTGCG
TCCGCAGAGG ACGTCGACCG CGCCGTGAAG GCCGCGAAAA ACGCTCTGCC GGCATGGAGC
GCCTCCGAAG CGAGCATGCG TGTCGATGCA CTTAGTCGGC TTCTCAAGGC TTACGTTGCT
CGGACCGAAG ACCTGGCAAG GGCGTTGGCA GCCGAAATGG GTGCTCCGAT CGATTTCGCT
CGTACAAGCC AGATCGGGGC GGGCGCGAAC CATCTGCGCG CCTTCATCAA GGCCCTGCAG
GAGTTCCATT TTGCCGAGCC CGCTCTCGTC GGGAGCGAAA ATCAGGAAAT TTTGCGTGAA
GCCGTTGGCG TGGCAGCGCT GATCACGCCA TGGAACTGGC CGCTTAATCA GATCACCCTG
AAGGTCGGCG CAGCCTTGGC TGCAGGTTGC ACTGTGGTCC TTAAGCCCTC GGAGGTATCA
CCGGTGTCCG GTCAGATCTT CGCCGAGATC GTCGAGGCTG CCAATCTGCC GAAGGGGGTT
TTCAACCTCG TGCAGGGCAC CGGCGCCGTG ACCGGGGCTG CCATGGTTGC CCATCCAGAC
GTCGATGTCG TCTCCTTCAC AGGTTCGACG CGCGCCGGTA TCGCGATTTC GTACGCCGCT
GCGCCGAGCA TCAAGCGTGT ATCGCTCGAA CTCGGCGGGA AGTCTCCCAG CATCGTCTTC
GCTGACGCTG ACGTCGAAAA GGCCGTTCGC TGGACCGCAA ACTTCTGCTT CAACAACACT
GGGCAGTCCT GCAATGCTTC GACTCGTATG CTGGTCGAGC GCAGCGTCTA CGACCGGGCG
GTGAAGCTCG CCACCGAAGT CGCAGAGGGC ATCGTCGTCG AGAGAGCCGA TCTTCCCGGA
ACCCATATCG GGCCGCTTTC TTCCAAGGTC CAGTACGACA AGGTCCTGAG CTGCATCGAC
CAGGCTGTTA GCGAAGGCGT CAACCTGATC ACCGGAGGTC GCGGCCGGCC CGAGCACCAC
AAACGCGGAT ACTTCGTCAG CCCGACCGTA TTTGCGGGCG TGACCCCAGA ACATTCGCTA
TTCCGCGATG AAGTGTTCGG ACCTGTTCTC GCCATCACAC CTTTCGATAG CGAGGAGGAG
GCGATCGAGC TCGCAAACGA CACCGTGTAT GGCCTTTCCG CCTACATTCA CACGGAAGAC
GCCGCGAAAG GCAAGCGCGT GGCCAGGAGC GTCCGGGCCG GCATGGTTCA GCTCAACGGG
TCCGCGCGCG CGCCTGGCAC ACCCTTCGGC GGCTACAAGC AGTCCGGCAA TGGCCGCGAA
GGCGGGCGTT GGGGCATCGA GGAATTCCTC GAGACGAAGC TCGTTGCGGG CTGA
|
|---|
| Protein sequence | MLRHPSEEES GRKAGIQIFT IDGLPLISGR PATTIKRKGT AMAPRPSIYI DNTWQPATGG
DTFWAVNPST EEAFAEFQIA SAEDVDRAVK AAKNALPAWS ASEASMRVDA LSRLLKAYVA
RTEDLARALA AEMGAPIDFA RTSQIGAGAN HLRAFIKALQ EFHFAEPALV GSENQEILRE
AVGVAALITP WNWPLNQITL KVGAALAAGC TVVLKPSEVS PVSGQIFAEI VEAANLPKGV
FNLVQGTGAV TGAAMVAHPD VDVVSFTGST RAGIAISYAA APSIKRVSLE LGGKSPSIVF
ADADVEKAVR WTANFCFNNT GQSCNASTRM LVERSVYDRA VKLATEVAEG IVVERADLPG
THIGPLSSKV QYDKVLSCID QAVSEGVNLI TGGRGRPEHH KRGYFVSPTV FAGVTPEHSL
FRDEVFGPVL AITPFDSEEE AIELANDTVY GLSAYIHTED AAKGKRVARS VRAGMVQLNG
SARAPGTPFG GYKQSGNGRE GGRWGIEEFL ETKLVAG
|
|---|
| |