| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8173 |
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| Symbol | |
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| ID | 7365079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 120250 |
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| End bp | 121284 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641781 |
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| Product | ABC transporter substrate binding protein (spermidine/putrescine) |
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| Protein accession | YP_002540078 |
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| Protein GI | 222080215 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTTCG CATTGCCGAA ATACTTGGCA GCCATCGCTG CTGTCCTGAG CGTATCCTCT
CCCTGTTTGG CTGATGTCAA TATCATTGGG TATCAAAGCG TGTTCGCGGA CAATTACCGC
AAGGCGGTGA TCGAGCCCTT TGAAAAGAAG ACGGGCATCA AGGTCATCTA CAACGAAATC
AACCTTTCAG CGCAAAATCT CGGCCGTATC CGCGCCGAGA AGAACAATCC GACCCTCGAT
CTTTCGATCA TGGACGCGAT GGTCTCACGT GCCGGCAATA CGGAAGGAAT TTTCGATCAG
GTCGATCTGA CCAAGCTTTC CAACGGCCAG AATCTCTTCG ACGAAGCCTA TATCAACAAG
GGTTTCGGTC CGGGCATTAC CTTCGACTAC CCCGTGTTGA TGTATAGCAA CTCGCTTGCC
AATCCTCCCA AGGCGCTGGC TGATCTTGCC AAGCCAGAAC TAAAGGGGCA GGTCGCCATG
TGGCCTGCCC CCGAAATTGC GGCCTTGATG AACACGATCC TGCTCACCCG GGCAGCCGGC
GGCGACGAGA AGAAATCTGT CGATCAGGGT GTCGAAAAGT TCGCGGAGAT CGCCAAGAAC
GTACAGACCT GGGCACCGGC GCCGGACGCT TACGAGCTGG TGTCCAACGG TACGGTCAAG
GCGGGCGCAG GCTGGAACGC GCGCGCCCAG TTCTTTGCAA AGGATCCAAA GAGCAATATG
AGCGTCGTCA TACCGACCGA AGGCTCGATG TTCCAAATCA ACACGCTGAA CCTCGTCAAG
GGTGCACCGA ACAAGGAAGA AGCGCTGAAG TTCATTGACT ACGCTCTGAG CCCAGAAGCG
CAGGCAGCCT TCGCCAACCT GATGTTCTAC TCGCCGACCA ACAAGGACGC GAAGCCGTCG
CAGGATGCCC TGTCGAAGAC TGCCTCGACC CCGGAAATTC GTGAAAAACT GAAGCCGCTC
GACTGGGCGT TCTTTGTCTC GAAGCGCGAA TCCTGGCTGC AGGAATGGCG CCGCAAAGTC
ATTACCGCGA ACTGA
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| Protein sequence | MAFALPKYLA AIAAVLSVSS PCLADVNIIG YQSVFADNYR KAVIEPFEKK TGIKVIYNEI
NLSAQNLGRI RAEKNNPTLD LSIMDAMVSR AGNTEGIFDQ VDLTKLSNGQ NLFDEAYINK
GFGPGITFDY PVLMYSNSLA NPPKALADLA KPELKGQVAM WPAPEIAALM NTILLTRAAG
GDEKKSVDQG VEKFAEIAKN VQTWAPAPDA YELVSNGTVK AGAGWNARAQ FFAKDPKSNM
SVVIPTEGSM FQINTLNLVK GAPNKEEALK FIDYALSPEA QAAFANLMFY SPTNKDAKPS
QDALSKTAST PEIREKLKPL DWAFFVSKRE SWLQEWRRKV ITAN
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