Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8172 |
Symbol | afuC |
ID | 7365078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 119141 |
End bp | 120235 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641780 |
Product | ABC transporter nucleotide binding/ATPase protein (iron) |
Protein accession | YP_002540077 |
Protein GI | 222080214 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.170371 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGTG GTGCCGAACT CAGTCTCCAA GACCTCTCAA AGTCGTATGA CGATAAGAAG CTTGTGCTCA ACAAGCTGAA CATCACTGCT GCACCTGGCG AAATTGTCTC GCTCCTCGGA CCGTCAGGCT GCGGCAAATC AACAGCTTTG AGGATTGTCG CAGGGTTGGT TGGAGCGACG TCCGGCCGTG TGATGCTGGC CGGCAAGGAT GTGACATCCC TGCCGACCTA CAAACGAAAT ATTGGTCTCG TCTTCCAGAA CTACGCCTTG TTCCCGCACA TGACGGTGCT GGACAATGTC GCGTTCGGCC TGGAAATGCG AAACGTCAAC CGGAAGGAAG CCAGATCCAG GGCGGGCGAG ATTCTGGAGA TGGTCAGGCT CGGAGCGCTC GGTCAACGCC GCCCGCGCCA GCTTTCCGGC GGTCAGCAAC AGCGCGTCGC ACTGGCCCGC GCTCTGGTCA TCCACCCCGA TCTCCTCCTT CTCGACGAGC CACTTTCCAA CCTCGACGCC AAGCTTCGCG AGCAAATGCA GGACGAAATT CGTGACCTGC AGCAACGCCT GGGAACGACT GCCATCTTCG TCACGCACGA TCAGTCCGAA GCGATGGCAA TCTCCGATCA CGTTGCCATC ATGAATGAAG GCGTGATCGT CCAGTACGGT CGACCCACGG AGATCTACGA GAACCCGGCA AGCAGTTTCG TCGCCAACTT CATCGGTCGC GTGAACAGTA TCGACGGCAT CAGCAATGCG GATGGCGATG CGAGTCAGCA GATCAAGACA GACACGGGGC TGTCCATCAA GCTTGCCAAG CCTTCGCTCA AGGGACCCGT TCAGTTTCTG ATCAGGCCAA GTTCGATCGA AGTCCTGCCG AGCTCAACCC CGAGCGAGGC TGGGCGAAAC CGCGTCCCCG CTTCGGTCCG CAAGGTCACC TATGCAGGAG ATATCGTTTC AGTCGCTTGT GATACCCAAG GGATCGCGAT GACAGCGGAA ATACCGGGCT CGTCTTCGGC CTGGCGCAGC CTGGAACCCG GGCAACAGGT CACATTGGAC TGGCCGGTGG CCAGCGGCTT TGTCTTCGAA CGGAAGGCGA ATTGA
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Protein sequence | MKSGAELSLQ DLSKSYDDKK LVLNKLNITA APGEIVSLLG PSGCGKSTAL RIVAGLVGAT SGRVMLAGKD VTSLPTYKRN IGLVFQNYAL FPHMTVLDNV AFGLEMRNVN RKEARSRAGE ILEMVRLGAL GQRRPRQLSG GQQQRVALAR ALVIHPDLLL LDEPLSNLDA KLREQMQDEI RDLQQRLGTT AIFVTHDQSE AMAISDHVAI MNEGVIVQYG RPTEIYENPA SSFVANFIGR VNSIDGISNA DGDASQQIKT DTGLSIKLAK PSLKGPVQFL IRPSSIEVLP SSTPSEAGRN RVPASVRKVT YAGDIVSVAC DTQGIAMTAE IPGSSSAWRS LEPGQQVTLD WPVASGFVFE RKAN
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