| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8171 |
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| Symbol | potB |
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| ID | 7365077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 118272 |
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| End bp | 119141 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641779 |
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| Product | ABC transporter membrane spanning protein |
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| Protein accession | YP_002540076 |
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| Protein GI | 222080213 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.123234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTCACA ACGACGAAAC AACGTCGGCT GGCGCGGCAG TCGGATGGCT GCTCAGCCTC
CCGATGCTCC TTGTGATCGG CTTCTTCTTT GTCTTGCCAA TCCTCTCAGT TGCCCTGATC
TCGTTTTATG GCTCCGCTGA AGGCGGCGTG CTGATCCCTG AACTCGGGAT TTCCGCATAC
GAGAAATTCT TCACAGACCC CTTCTCGCGA GAGATCGTCA TCCGATCGAT CATATTGAGC
CTGCTGGTCA CGCTTCTCGC ATGCATTTTG ACCTACCCGA TTGCGCTTTA CCTGTACCGC
ACCACATCAA GGTGGAAAGG GACGCTCGTT CTGCTGACGG TCTCACCTCT CCTCCTCAGC
GCAGTCGTGA GAACCTACAG CTGGATGCTA ATCTTGCGCC CGCTGGAGGA TTTCATTCAT
TGGATCGGTT TCGCCAATGT GCGCCTAGTC AACGACTATC CGGGCGTCGT GATCGGCCTG
ACCCATATCA TGATGCCCTA CATGGCTCTT TGCTTGCTGT CCGGCTTTGG AAAGATCGAT
CCGAATGTTG AGGACGCTGC CAGTTCGCTG GGCGCAACGC CGGCACGCCG GTTCTTCCGG
ATCACTTTAC CGCTCAGCCT GCCGGGCGTC ACGCTTGGCT GCATTCTGAC ATTCGTGTTG
GCAATATCGG CTTTTGTGAC GCCAGCCCTG CTTGGCGGGG GACGCGTCTT CCTGCTGCCG
ACAGAGATCT TCACCCAGGC CCTGGAAATT CTCGATTGGC CACTGGCATC GGCCATGTCG
ATGGTTCTCC TCGGGCTGTT CATTCTCACC ATGGGACTTA TCCGCGTCTG GGATATGCGG
ACGCGTGCTA AATCGGGGGT GTTGTCGTGA
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| Protein sequence | MAHNDETTSA GAAVGWLLSL PMLLVIGFFF VLPILSVALI SFYGSAEGGV LIPELGISAY
EKFFTDPFSR EIVIRSIILS LLVTLLACIL TYPIALYLYR TTSRWKGTLV LLTVSPLLLS
AVVRTYSWML ILRPLEDFIH WIGFANVRLV NDYPGVVIGL THIMMPYMAL CLLSGFGKID
PNVEDAASSL GATPARRFFR ITLPLSLPGV TLGCILTFVL AISAFVTPAL LGGGRVFLLP
TEIFTQALEI LDWPLASAMS MVLLGLFILT MGLIRVWDMR TRAKSGVLS
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