| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8160 |
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| Symbol | attK |
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| ID | 7365070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 108866 |
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| End bp | 110350 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643641772 |
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| Product | NAD-dependent succinate aldehyde dehydrogenase |
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| Protein accession | YP_002540069 |
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| Protein GI | 222080206 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.407408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTATTT CAAATTCGCT TCTATCAAGG CTCAAAGACC CCACGCTTGT CACCGATAAG
GCATTTATTG CGGGGCAGTG GCAAGCGACG GGCGAGAACG GTGCCAGTTT CGAGGTTACC
AATCCATCGA CCGGCGACGT GATCGCCGTC TTGCCCGATA TGACACGCGT GGATGCCGCT
GGTGCCATTG ACGCAGCTTT TAAGGCGCAG AAGCTATGGG CAAGGAAGAC TGGGAAAGAG
CGAGCCGCCG TCCTGCGAAG GTTGTTTGAC ATGATGGTCG CGAATGCGGA CGACCTGGCT
GTCATTTTGA CCGCGGAAAT GGGAAAGCCG CTCACCGAGG CCAAAGGTGA AATCCTGTAT
GGTGCGTCCT ACGTGGAATG GTTCGGCGAG GAAGCAAAGC GCATTTACGG TGACACGATT
CCCGGTCATC AACAGGACAA GCGCATCATC GTATTGAAGC AGCCAATCGG AGTTGTCGCC
TCGATCACAC CCTGGAACTT CCCCAATGCC ATGCTGGCGC GAAAGTTCGC CCCGGCCATC
GCGGCCGGTT GCTCTATCGT GTCGAAGCCG GCGTCGGAAA CGCCTCTCTC GGCTCTTGCG
CTTGCTGTTC TTGCAGAGCG GGCCGGGCTG CCGGCTGGTT TGTTTAACGT CGTGACCTCG
ACGAAATCAG CCGATATTGG TCGAGAATTC ACCGAAAACG ACAAGGTCAG GAAGCTGACC
TTTACGGGCT CAACAGATGT CGGCAAGATC TTAATGCGCC AAGGCGCTGA GCAGATCATG
AAGCTCGGGC TGGAGCTTGG CGGCAACGCG CCATTTATCG TCTTCGATGA CGCCGATCTC
GATGCTGCCG TCGAAGGCGC GATGATTTCG AAATATCGCA ACAACGGCCA AACCTGCGTT
TGCGCCAATC GCCTCTACGT GCAGGCCGGG GTGTATGACG CGTTCGCGGA GAAGCTCGCG
GCTCGTGTAT CGACCATGAA GGTTGGCGAT GGGTTCGAGG ACGGCGTCAT GGCTGGTCCG
CTCATTACTG AAAAAGCCGT CGCCAAAGTC GAGGAGCACA TTGCCGATGC ACTCAAAAAA
GGTGGCGCCA TCGCAGTAGG CGGCTCGCGG GACGTCCGTG GCGGTCTGTT CTTCCAGCCA
ACCGTTCTGA CGGGCGTAAC CTCTGCAATG AAAGTGGCAA AGGAGGAGAC CTTTGGTCCC
GTTGCACCGT TGTTCCGGTT TGAAACTGAA GACGATGTTG TCGAGATGGC CAATGATACC
GAATTCGGTT TGGCCTCTTA TTTCTATGCT AAGGATCTTT CGCGCGTATT TCGCGTCGCG
GAGGCCTTGG AATACGGGAT GGTCGGGATC AATACAGGGC TGATTTCCAC AGAGGTCGCG
CCCTTTGGTG GCATCAAGCA GTCGGGGCAG GGTAGAGAGG GTTCGAAATA CGGAATCGAT
GACTATGTCG AGATCAAATA TCTTTGCGTG AGCATTGAAG ACTGA
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| Protein sequence | MAISNSLLSR LKDPTLVTDK AFIAGQWQAT GENGASFEVT NPSTGDVIAV LPDMTRVDAA
GAIDAAFKAQ KLWARKTGKE RAAVLRRLFD MMVANADDLA VILTAEMGKP LTEAKGEILY
GASYVEWFGE EAKRIYGDTI PGHQQDKRII VLKQPIGVVA SITPWNFPNA MLARKFAPAI
AAGCSIVSKP ASETPLSALA LAVLAERAGL PAGLFNVVTS TKSADIGREF TENDKVRKLT
FTGSTDVGKI LMRQGAEQIM KLGLELGGNA PFIVFDDADL DAAVEGAMIS KYRNNGQTCV
CANRLYVQAG VYDAFAEKLA ARVSTMKVGD GFEDGVMAGP LITEKAVAKV EEHIADALKK
GGAIAVGGSR DVRGGLFFQP TVLTGVTSAM KVAKEETFGP VAPLFRFETE DDVVEMANDT
EFGLASYFYA KDLSRVFRVA EALEYGMVGI NTGLISTEVA PFGGIKQSGQ GREGSKYGID
DYVEIKYLCV SIED
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