| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8140 |
|---|
| Symbol | traR |
|---|
| ID | 7365057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 94839 |
|---|
| End bp | 95522 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641759 |
|---|
| Product | transcriptional regulator TraR |
|---|
| Protein accession | YP_002540056 |
|---|
| Protein GI | 222080193 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.692827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTGACCGATC TCGCCGCGAT CGAAGGCGAT GAGTGCATCC TGAAGACCGG GTTGGCGGAC
ATCGCCGATC ATTTCGGCTT CACCGGCTAT GCCTACCTCC ATATCCAGCA CAGGCACATC
ACCGCCGTCA CCAACTATCA TCCCGAGTGG CAGTCGGTCT ATTTCGACAA GAAGTTCGAC
GCTCTCGACC CGGTCGTCAA GCGCGCAAGA TCCCGGAAGC ACATCTTCAC CTGGTCTGGC
GAGCACGAGC GACCGACACT GTCGAAGGAC GAGCGTGCCT TCTATGCCCA CGCAGCCGAT
TTCGGCATCC GCTCCGGCAT CACCATACCC ATCAAGACTG CCAACGGCTC GATGTCGATG
TTCACGCTGG CATCAGAGAA GCCGGTGATT GATCTCGATC GGGAAATCGA TGCAGTGGCA
GCCGCGGGAA CCATCGGGCA GATCCATGCC CGTATCTCAT TCCTCCGCAC CACCCCTACC
GCGGAAGATG CCGCATGGCT CGATCCGAAG GAGGCCACCT ATCTGAGATG GATTGCCGTC
GGCAAGACGA TGGAGGAGAT CGCCGACGTC GAAGGGGTCA AGTACAACAG CGTCCGCGTC
AAGCTTCGCG AAGCCATGAA GCGCTTCGAT GTCCGCTCCA AGGCGCATCT TACCGCGCTC
GCGATCCGAC GAAAACTCAT TTGA
|
|---|
| Protein sequence | MTDLAAIEGD ECILKTGLAD IADHFGFTGY AYLHIQHRHI TAVTNYHPEW QSVYFDKKFD
ALDPVVKRAR SRKHIFTWSG EHERPTLSKD ERAFYAHAAD FGIRSGITIP IKTANGSMSM
FTLASEKPVI DLDREIDAVA AAGTIGQIHA RISFLRTTPT AEDAAWLDPK EATYLRWIAV
GKTMEEIADV EGVKYNSVRV KLREAMKRFD VRSKAHLTAL AIRRKLI
|
|---|
| |