Gene Avi_8135 details

Gene Information

• Locus tag: Avi_8135
• Symbol: traH
• ID: 7365053
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: +
• Start bp: 92094
• End bp: 92723
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643641755
• Product: conjugal transfer protein TraH
• Protein accession: YP_002540052
• Protein GI: 222080189

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGATG CCGCCCTTAT CAAGCAATGT GCCGATCCGG CCCTGAAGCC CGCAATTGTC 
GAGCAGTTCA TCGCGCGTGT TGGATCGCAA GACCCGTTGG CAATCACCGT CCGGTCTGGA 
AGCCGCGTGG TGCTGGTGCC CAAGCCCATG ACGCCGGAGG AGGCGCTGGT GCTGATCCGC 
GACAATCTCG GCCGCAATAC CGTGCGCGTC GGCATCACCC AATATCCGGC GGGGCTCGGA 
ATCGTCGAGG CCGGGCAGCT GAAGCCCGAT CTGGTCGATG CTTGCGAAAA CATCCGTATG 
GGCACGGCGC TCTTCGCCAA GGTCTGGCGC ATCGTCATGA AGTGGTATGG CAATCCGACC 
GCCGCTGACG TGCTTCCGCA AGTGATGGAC GATTCGATCA TCGCCTGGCA GACGGGATAC 
TTCGAGGGAA CGGCGGTGTT TCGGGCGGAA GATCCCGGCG AGGGGAAAAT TTCCCAACCT 
GCTACGATCC AGAGTGACGA GGCCGAGGCA AGCGCTCGTT CTCGCGAAAA TCCAGGAGAT 
GAAGCTCCTT CACCTGAAGA CGTCTCGTCT GATCCAAACA AGGCTGGCAT CAGGATCGAC 
CTCTCGGGGA TCGGGGCGCG AGAGCGTTAA 

 

Protein sequence

MVDAALIKQC ADPALKPAIV EQFIARVGSQ DPLAITVRSG SRVVLVPKPM TPEEALVLIR 
DNLGRNTVRV GITQYPAGLG IVEAGQLKPD LVDACENIRM GTALFAKVWR IVMKWYGNPT 
AADVLPQVMD DSIIAWQTGY FEGTAVFRAE DPGEGKISQP ATIQSDEAEA SARSRENPGD 
EAPSPEDVSS DPNKAGIRID LSGIGARER