| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8132 |
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| Symbol | traF |
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| ID | 7365051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 90329 |
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| End bp | 90859 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643641754 |
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| Product | conjugal transfer pilin processing protease TraF |
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| Protein accession | YP_002540051 |
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| Protein GI | 222080188 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.562058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGCGGC GTAGGGTTCT GTTGTTGCTG ACGGGCGCCG GCGTCCTTAT GTCAGGTCTG
GTGTCGATAG CGTTCTTGGG CGGGTATCGG CTGAATCTGA CGACGAGCGA GCCGCTCGGG
CTTTGGCGCA TCGATGCGCT TCACCGTCCG GTCGCGATCG GCGATCTTGT TTTCATTTGC
CCGCCGGAAA CATCGGCAAT CGAGCAAGCC CGCGTGCGCG GGTATTTGCG GCGTGGGCTC
TGCGATGACG GGTTTGCGCC GTTGATCAAG ACGATCGCGG CGCTGCCCGG TCAGCATGTC
GACATCGCCG GCCACGTTGC CATCGATGGC CGCTCTTTAC CTGCATCCAC TGTGCGCGAT
CGGGACGGTG AGGGCAGACC GCTCACCCCT GATCCCGGCG GCATCGTGCC GCCGCATCAC
CTGTTTCTCC ACTCTTCCTT TGCGAGCTCC TATGATAGTC GATACTTCGG CCCGGTTCCG
GATTCCGGTC TTCTCGGCTT GGCGCAGCCG GTTATCACCT TCGATCCGTG A
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| Protein sequence | MRRRRVLLLL TGAGVLMSGL VSIAFLGGYR LNLTTSEPLG LWRIDALHRP VAIGDLVFIC
PPETSAIEQA RVRGYLRRGL CDDGFAPLIK TIAALPGQHV DIAGHVAIDG RSLPASTVRD
RDGEGRPLTP DPGGIVPPHH LFLHSSFASS YDSRYFGPVP DSGLLGLAQP VITFDP
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