Gene Avi_8128 details

Gene Information

• Locus tag: Avi_8128
• Symbol: traG
• ID: 7365213
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: -
• Start bp: 84307
• End bp: 86271
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643641750
• Product: conjugal transfer coupling protein TraG
• Protein accession: YP_002540047
• Protein GI: 222080184
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3505] Type IV secretory pathway, VirD4 components
• TIGRFAM ID: [TIGR02767] Ti-type conjugative transfer system protien TraG

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.147947
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGCGA GTAAAGTGTT CCTCGCCGTC ATCCCGGCCG CGATGATGAT CGTCGTCTTG 
GTGTTCATGG CGGGGATCGA ACACTGGCTG GCCGCTCTCA GTAAGACCGG GCAGGCAAAG 
CTGATGCTCG GGCGGATCGG CCTCGCGCTG CCCTATGCGA CCGCGGCTGC GATCGGCACG 
CTTTTCCTGT TCGCGTCGAA TGGCGCAGCG GGCGTCAAAG CGGCAGGATG GGGTGTTGTC 
AGCGGAAGTG GAGTGGTAGT CGCGATCGCG GTGCTGCGTG AAGGGGTTCG CCTTTCCGGG 
ATAACCGGTG AAGTGCCAGC AGGACAGTCC GTGTTTGGAT ATGCGGACCC CGCAACGATG 
CTTGGCGCAT CGACAACGTT CCTCGCCGGC GTCTTCGCAC TGCGCGTGGC GATGAAGGGT 
AACGCAGCTT TTGCCAAAGC CGCACCACGG CGGATTGGGG GAAAGCGAGC GGTGCATGGC 
GAGGCCGACT GGATGAAAGT GCAGGAGGCG GCAAGACTTT TCCCCGATCC CGGCGGCATC 
GTTGTCGGTG AACGGTATCG TGTCGATAGC GTTGCGGCGG TGTCGTTCCG CGCCGATGAT 
CCGTTGACCT GGGGAGCGGG AGGCAAGAGC CCGCTCCTAT GCTTCGACGG CTCCTTCGGC 
TCGTCGCATG GCATCGTCTT CGCCGGCTCC GGCGGTTTCA AGACGACGTC TGTAACGGTC 
CCGACCGCGC TCAAGTGGGG TGGCGGCCTC GTTGTCCTCG ACCCGTCGAG CGAGGTCGCG 
CCGATGGCAT CGGAGCATCG CCGCAAGGCT GGCAGGAAGG TGATCATTCT CGATCCCTCG 
GCGTCAGGCG TCGGCTTCAA TGCGCTCGAC TGGATCGGGC GACACGGCAG CACGAAGGAA 
GAGGATATCG TCGCCGTCGC GACCTGGATT ATGACCGACA ATCCGCGCTC GGCGTCTGCC 
CGCGACGACT TCTTTCGGGC ATCGGCGATG CAGCTTCTGA CAGCCCTGAT CGCCGACGTC 
TGCCTATCCG GTCACACGGA CGAGGAAGAC CAGACGCTGC GCCGTGTGCG GACGAACCTT 
TCGGAGCCTG AACCACAGCT ACGGGCGCGC TTGACAAAAA TCTACGAACA GTCGGAATCG 
GACTTCGTGA AGGAGAACGT CTCGGTCTTC GTCAACATGA CGCCGGAGAC GTTTTCCGGC 
GTCTACGCCA ATGCGGTGAA AGAAACCCAC TGGCTGTCCT ATCCGAACTA CGCCGCGCTC 
GTCTCAGGCG ACAGTTTCTC GACCGACGAT CTTGCCGATG GCGGGACAGA CATCTTTATT 
GCGCTCGATC TGAAGGTCCT CGAAGCCCAT CCAGGACTGG CGCGTGTGGT TATCGGATCA 
CTGCTCAATG CCATCTACAA TCGAAATGGC GATGTGAAGG GTCGCGCGCT CTTCCTGCTC 
GACGAGGTGG CCAGGCTCGG CTACCTGCGG ATCTTAGAGA CCGCGCGCGA CGCCGGGCGC 
AAATACGGCA TCACGCTGAC GATGATCTTT CAGTCCATCG GCCAGATGCG CGAGGCCTAT 
GGCGGGCGGG ACGCGACGAG CAAATGGTTC GAATCCGCGT CGTGGATCTC GTTTGCCGCG 
ATCAACGATC CCGACACGGC CGACTATATC TCGAAACGCT GCGGCGATAC GACCGTCGAG 
GTCGACCAGA CAAACCGCTC GTCAGGGATG AAGGGATCGT CGCGCTCACG TTCCCGGCAG 
CTCAGCCGCC GTCCACTGAT CCTGCCGCAT GAGGTGCTGC GCATGCGCGC TGACGAGCAG 
ATCGTGTTCA CATCGGGCAA TCCGCCGCTC CGATGCGGAC GCGCCATCTG GTTCCGACGC 
AAGGATATGA GCGCGTCCGT CGGAGAAAAC CGCTTTCATA AGCAAATCGC GGACGGAGTG 
AAGAGCTATA AGGCCGCTGG GATGACAGAC ACTGAGGAGA CATGA 

 

Protein sequence

MTASKVFLAV IPAAMMIVVL VFMAGIEHWL AALSKTGQAK LMLGRIGLAL PYATAAAIGT 
LFLFASNGAA GVKAAGWGVV SGSGVVVAIA VLREGVRLSG ITGEVPAGQS VFGYADPATM 
LGASTTFLAG VFALRVAMKG NAAFAKAAPR RIGGKRAVHG EADWMKVQEA ARLFPDPGGI 
VVGERYRVDS VAAVSFRADD PLTWGAGGKS PLLCFDGSFG SSHGIVFAGS GGFKTTSVTV 
PTALKWGGGL VVLDPSSEVA PMASEHRRKA GRKVIILDPS ASGVGFNALD WIGRHGSTKE 
EDIVAVATWI MTDNPRSASA RDDFFRASAM QLLTALIADV CLSGHTDEED QTLRRVRTNL 
SEPEPQLRAR LTKIYEQSES DFVKENVSVF VNMTPETFSG VYANAVKETH WLSYPNYAAL 
VSGDSFSTDD LADGGTDIFI ALDLKVLEAH PGLARVVIGS LLNAIYNRNG DVKGRALFLL 
DEVARLGYLR ILETARDAGR KYGITLTMIF QSIGQMREAY GGRDATSKWF ESASWISFAA 
INDPDTADYI SKRCGDTTVE VDQTNRSSGM KGSSRSRSRQ LSRRPLILPH EVLRMRADEQ 
IVFTSGNPPL RCGRAIWFRR KDMSASVGEN RFHKQIADGV KSYKAAGMTD TEET