| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8116 |
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| Symbol | |
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| ID | 7365206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 80677 |
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| End bp | 81684 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643641743 |
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| Product | integrase/recombinase |
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| Protein accession | YP_002540040 |
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| Protein GI | 222080177 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000851463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCAA TCGCTCCGCT CATCACCCGC TTCATGCGGG AGCACATGCC GCAGCAGCGC
GGCTATAGTC CGCACTCCTG CGAAGCCTAC GCGTATAGCT TCCGGCTGCT GTTCGTCTTC
GCTGCCGGGC GCTTGCATAC ACGCCCGTCT TTGCTCCATC TCGAGCAGAT CGATGCGGAC
ATGGTGCTCG CGTTCCTGCA TCACATCGAA CATGATCGCG GTAACGGCGC GTCGACCCGC
AACTTGCGGC TCGCCGCGAT CAAGGCGTTC ATGCGCTACG TCGAGCTGCG GCACCCAAAC
GCCCTGGAGC AGATCGCCCA GATCAACGCT ATCCCGGGCA AGCGCCATGA CCACAAGCTC
ATTCGCCACC TGACCATGGA CGAGGTCCGT GCCGTGCTCG ACGCGCCCGA TATAAAGACG
CGGCTGGGGC TGCGGGACCG GGCGATGCTG CACCTCTGCT TTGCCGGGGG CCTGCGCGTC
TCCGAACTGG TCGGCCTCAC CCTGGAGAAC GTCACGCTGC AACCCAGTCC GAGCATCCTG
GTGTTCGGCA AGGGCCGGCG CGAGCGCAGT CTTCCGCTCT GGAAAGAAAC GGCCCGCGAC
GTGCGAGCCT GGCTTGCGGT GCGCGGAAAG CCACCGGTGA CGGAGCTGTT CGTCAATGCT
CAAGGAATGG CAATGACCCG AGCCGGCTTC GAGTATATCC TCGAAAAGCA CGCAAAGGCC
GCCGCAGCTC GATGCCCGAC GCTGATCGGC CGGCCGCTCT CACCCCATCT TCTGCGGCAC
AGTTGCGCGG TTCTCATGCT GCAGGCCACG CGCGATATCC GTAAGGTCGC GCTCTGGCTT
GGCCATGCCG ATATCCGCAC GACCGAGGTA TACCTGCGGA TGGACCCGTC CGAGAAGCTC
GAGGCCATAG AGGCCGTGTT GCCGCCGGCG CTCCGTCGCG GTCGGTTCAG GGCCCCGGAC
GCATTGATCG CGTCGCTGAT GGCCGATGCG CATACCGCGT CAACGTAA
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| Protein sequence | MTPIAPLITR FMREHMPQQR GYSPHSCEAY AYSFRLLFVF AAGRLHTRPS LLHLEQIDAD
MVLAFLHHIE HDRGNGASTR NLRLAAIKAF MRYVELRHPN ALEQIAQINA IPGKRHDHKL
IRHLTMDEVR AVLDAPDIKT RLGLRDRAML HLCFAGGLRV SELVGLTLEN VTLQPSPSIL
VFGKGRRERS LPLWKETARD VRAWLAVRGK PPVTELFVNA QGMAMTRAGF EYILEKHAKA
AAARCPTLIG RPLSPHLLRH SCAVLMLQAT RDIRKVALWL GHADIRTTEV YLRMDPSEKL
EAIEAVLPPA LRRGRFRAPD ALIASLMADA HTAST
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